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BaseInfo

ncRNA ID	novel_zma_miR150
Species	Zea mays
Class	miRNA
Genome position	Chr3:68053610-68053718 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	86 - GUGGAUUGAGGUUAAUACUAGAGU - 109
Stem-loop(if miRNA)	--             C            A  A                  C      UUUAGUAUUGACC CAAUCCACAUGU UU AGGUGGAUUGGGGUGUAA UUAA   ||||||||||||| |||||||||||| || |||||||||||||||||| |||A   AGAUCAUAAUUGG GUUAGGUGUACA AA UCCGCCUAACCCCACAUU AAUC UG             A            C  C                  U
Stem-loop sequence	UUUAGUAUUGACCCCAAUCCACAUGUAUUAAGGUGGAUUGGGGUGUAACUUAAACUAAUUUACACCCCAAUCCGCCUCAACACAUGUGGAUUGAGGUUAAUACUAGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543503.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||| targets:1808   ACUCUAGUAUUGACCUCAAUCCAC   1831 Target Full Sequence	1.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||| targets:1807   ACUCUAGUAUUGACCUCAAUCCAC   1830 Target Full Sequence	1.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI407245.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||| targets:13   ACUCUAGUAUUGACCUCAAUCCAC   36 Target Full Sequence	1.5	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
JB167706.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||| targets:13   ACUCUAGUAUUGACCUCAAUCCAC   36 Target Full Sequence	1.5	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239375.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||| targets:13   ACUCUAGUAUUGACCUCAAUCCAC   36 Target Full Sequence	1.5	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008646892.2	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||= targets:3305   ACUCUAGUAUUGACCUCAAUCCAU   3328 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646891.2	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||= targets:3210   ACUCUAGUAUUGACCUCAAUCCAU   3233 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646893.2	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||=|||||||||||= targets:3124   ACUCUAGUAUUGACCUCAAUCCAU   3147 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020540612.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |=||||||||||||||||||=||| targets:1700   AUUCUAGUAUUAACCUCAAUUCAC   1723 Target Full Sequence	1.5	PREDICTED: Zea mays membrane protein (LOC100381468), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   =|||||||||||||||||||=||| targets:851   GCUCUAGUAUUAACCUCAAUUCAC   874 Target Full Sequence	1.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
EU955100.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |=||||||||||||||||||=||| targets:631   AUUCUAGUAUUAACCUCAAUUCAC   654 Target Full Sequence	1.5	Zea mays clone 1509994 membrane protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001326691.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |=||||||||||||||||||=||| targets:631   AUUCUAGUAUUAACCUCAAUUCAC   654 Target Full Sequence	1.5	Zea mays membrane protein (LOC100381468), mRNA	NA	coding protein	psRNATarget
XM_020539168.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||*|||||||||||| targets:1318   ACUCUAGUAUUCACCUCAAUCCAC   1341 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC107275233 (LOC107275233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950672.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||*|||||||||||| targets:1021   ACUCUAGUAUUCACCUCAAUCCAC   1044 Target Full Sequence	1.5	Zea mays clone 508256 mRNA sequence	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   =|||||||||||||||||||=||= targets:608   GCUCUAGUAUUAACCUCAAUUCAU   631 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   =|||||||||||||||||||=||= targets:608   GCUCUAGUAUUAACCUCAAUUCAU   631 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
AY104367.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   =|||||||||||||||||||=||= targets:541   GCUCUAGUAUUAACCUCAAUUCAU   564 Target Full Sequence	2.5	Zea mays PCO134486 mRNA sequence	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||||||||||||| targets:1   UCUAGUAUUAACCUCAAUCCAC   22 Target Full Sequence	0.0	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
JB163822.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||||||||||||| targets:1   UCUAGUAUUAACCUCAAUCCAC   22 Target Full Sequence	0.0	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
HI403361.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||||||||||||||| targets:1   UCUAGUAUUAACCUCAAUCCAC   22 Target Full Sequence	0.0	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
BT070204.2	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||*|||||||||=|||||||||| targets:910   ACUAUAGUAUUAAUCUCAAUCCAC   933 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0171F04 mRNA, complete cds	NA	coding protein	psRNATarget
EU963469.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||*||||||||||=||||||| targets:963   ACUCUUGUAUUAACCUUAAUCCAC   986 Target Full Sequence	2.5	Zea mays clone 263014 mRNA sequence	NA	coding protein	psRNATarget
HI407232.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||*||||||||||=||||||| targets:13   ACUCUUGUAUUAACCUUAAUCCAC   36 Target Full Sequence	2.5	Sequence 5357 from Patent EP2074227	NA	coding protein	psRNATarget
JB167693.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||*||||||||||=||||||| targets:13   ACUCUUGUAUUAACCUUAAUCCAC   36 Target Full Sequence	2.5	Sequence 5357 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239362.1	ncRNA:24   UGAGAUCAUAAUUGGAGUUAGGUG   1   |||||*||||||||||=||||||| targets:13   ACUCUUGUAUUAACCUUAAUCCAC   36 Target Full Sequence	2.5	Sequence 5357 from Patent EP2985353	NA	coding protein	psRNATarget
JB163782.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
HI403319.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1444 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
HI403320.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
JB163837.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
JB163780.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1444 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
JB163781.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
JB163690.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235449.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1444 from Patent EP2985353	NA	coding protein	psRNATarget
HI403229.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
HI403321.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
HI403376.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   |||||||||=|||||||||||| targets:1   UCUAGUAUUGACCUCAAUCCAC   22 Target Full Sequence	1.5	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
HI403075.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||=|||||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||=|||||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
JB163536.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||=|||||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
HI403017.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||=|||||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
JB163478.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||=|||||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||=|||||||||||| targets:1   CUAGUAUUGACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
HI403262.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   ||||*||||=|||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
JB163724.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   ||||*||||=|||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   ||||*||||=|||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   ||||*||||=|||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
HI403263.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   ||||*||||=|||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
JB163723.1	ncRNA:22   AGAUCAUAAUUGGAGUUAGGUG   1   ||||*||||=|||||||||||| targets:1   UCUAAUAUUGACCUCAAUCCAC   22 Target Full Sequence	2.5	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
JB163457.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||*|||||||||||| targets:1   CUAGUAUUCACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||*|||||||||||| targets:1   CUAGUAUUCACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
HI402996.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||||||*|||||||||||| targets:1   CUAGUAUUCACCUCAAUCCAC   21 Target Full Sequence	1.5	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
JB163411.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||*|||=|||||||||||| targets:1   CUAGCAUUGACCUCAAUCCAC   21 Target Full Sequence	2.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||*|||=|||||||||||| targets:1   CUAGCAUUGACCUCAAUCCAC   21 Target Full Sequence	2.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
HI402950.1	ncRNA:21   GAUCAUAAUUGGAGUUAGGUG   1   ||||*|||=|||||||||||| targets:1   CUAGCAUUGACCUCAAUCCAC   21 Target Full Sequence	2.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget