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BaseInfo

ncRNA ID	osa-miR164e
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:10542157-10542288 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - UGGAGAAGCAGGGCACGUGAG - 31
Stem-loop(if miRNA)	UU    AG          CA                     ---    -- -  UUCGCUGCGCGUCC   GUGC  GGUGGAGAAG  GGGCACGUGAGCGGCCAUCCA   GUGU  A GC              A   ||||  ||||||||||  |||||||||||||||||||||   ||||  | ||   CACG  CCACCUCUUC  CCUGUGUACUUGCUGGUAGGU   AGGU  A UG              U GU    AG          UG                     UUG    CU G  CGCGCAAGCGGCGG
Stem-loop sequence	UUGUGCAGGGUGGAGAAGCAGGGCACGUGAGCGGCCAUCCAGUGUAGCUUCGCUGCGCGUCCAUGGCGGCGAACGCGCGUGAUCUGGAGUUUGGAUGGUCGUUCAUGUGUCCGUCUUCUCCACCGAGCACUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT834765.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   ||||||||*|||||||||||| targets:934   CUCACGUGACCUGCUUCUCCA   954 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence	NA	coding protein	psRNATarget
XM_015768467.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||||||||||||||||||| targets:3923   AGCACGUGCCCUGCUUCUCCA   3943 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 18 (LOC9267442), mRNA	zinc finger CCCH domain-containing protein 18(LOC9267442)	coding protein	psRNATarget
BT130279.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   =*||||||||||||||||||| targets:233   UGCACGUGCCCUGCUUCUCCA   253 Target Full Sequence	0.0	Oryza sativa clone RRlibD00893 mRNA sequence	NA	coding protein	psRNATarget
CT830107.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:1672   CGCACGUGACCUGCUUCUCCA   1692 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence	NA	coding protein	psRNATarget
CT828636.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:1295   CGCACGUGACCUGCUUCUCCA   1315 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012A02, full insert sequence	NA	coding protein	psRNATarget
AK071020.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:914   CGCACGUGACCUGCUUCUCCA   934 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023080H09, full insert sequence	NA	coding protein	psRNATarget
XM_015767903.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:924   CGCACGUGACCUGCUUCUCCA   944 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4329768), transcript variant X1, mRNA	NAC domain-containing protein 92(LOC4329768)	coding protein	psRNATarget
XM_015767904.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:921   CGCACGUGACCUGCUUCUCCA   941 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4329768), transcript variant X2, mRNA	NAC domain-containing protein 92(LOC4329768)	coding protein	psRNATarget
XM_015778436.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:839   CGCACGUGACCUGCUUCUCCA   859 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4336052), transcript variant X1, mRNA	NAC domain-containing protein 92(LOC4336052)	coding protein	psRNATarget
XM_015778438.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:820   CGCACGUGACCUGCUUCUCCA   840 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 92 (LOC4336052), transcript variant X2, mRNA	NAC domain-containing protein 92(LOC4336052)	coding protein	psRNATarget
AK104626.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:790   CGCACGUGACCUGCUUCUCCA   810 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence	NA	coding protein	psRNATarget
AK061745.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:790   CGCACGUGACCUGCUUCUCCA   810 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence	NA	coding protein	psRNATarget
AB028181.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:785   CGCACGUGACCUGCUUCUCCA   805 Target Full Sequence	1.5	Oryza sativa mRNA for OsNAC2 protein, complete cds	NA	coding protein	psRNATarget
AK108080.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:741   CGCACGUGACCUGCUUCUCCA   761 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-138-E10, full insert sequence	NA	coding protein	psRNATarget
AB028180.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:834   CGCACGUGACCUGCUUCUCCA   854 Target Full Sequence	1.5	Oryza sativa mRNA for OsNAC1 protein, complete cds	NA	coding protein	psRNATarget
DQ520641.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   |*||||||*|||||||||||| targets:733   CGCACGUGACCUGCUUCUCCA   753 Target Full Sequence	1.5	Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_015765089.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:934   AGCAAGUGCCCUGCUUCUCCA   954 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4352763), transcript variant X1, mRNA	NAC domain-containing protein 21/22(LOC4352763)	coding protein	psRNATarget
XM_015765090.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:931   AGCAAGUGCCCUGCUUCUCCA   951 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4352763), transcript variant X2, mRNA	NAC domain-containing protein 21/22(LOC4352763)	coding protein	psRNATarget
AK071464.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:912   AGCAAGUGCCCUGCUUCUCCA   932 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence	NA	coding protein	psRNATarget
XM_015787635.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:970   AGCAAGUGCCCUGCUUCUCCA   990 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4341823), transcript variant X1, mRNA	NAC domain-containing protein 21/22(LOC4341823)	coding protein	psRNATarget
AK063648.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:954   AGCAAGUGCCCUGCUUCUCCA   974 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence	NA	coding protein	psRNATarget
XM_015787636.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:747   AGCAAGUGCCCUGCUUCUCCA   767 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group NAC domain-containing protein 21/22 (LOC4341823), transcript variant X2, mRNA	NAC domain-containing protein 21/22(LOC4341823)	coding protein	psRNATarget
JC611934.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   **||*|||||||||||||||| targets:668   AGCAAGUGCCCUGCUUCUCCA   688 Target Full Sequence	1.0	Sequence 96 from Patent WO2014106838	NA	coding protein	psRNATarget
LQ236107.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   =*||=|||||||*|||||||| targets:157   UGCAUGUGCCCUUCUUCUCCA   177 Target Full Sequence	2.5	Sequence 2102 from Patent EP2985353	NA	coding protein	psRNATarget
JB164438.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   =*||=|||||||*|||||||| targets:157   UGCAUGUGCCCUUCUUCUCCA   177 Target Full Sequence	2.5	Sequence 2102 from Patent EP2559767	NA	coding protein	psRNATarget
HI403977.1	ncRNA:21   GAGUGCACGGGACGAAGAGGU   1   =*||=|||||||*|||||||| targets:157   UGCAUGUGCCCUUCUUCUCCA   177 Target Full Sequence	2.5	Sequence 2102 from Patent EP2074227	NA	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).