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BaseInfo

ncRNA ID	novel_zma_miR146
Species	Zea mays
Class	miRNA
Genome position	Chr10:105693078-105693247 [+]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2647221;SRR2647343;SRR2647385;SRR2647389;SRR1583942
Length	24
Mature sequence(if miRNA)	1 - AAUCCCUAGUAAGUUAAAAUCUCU - 24
Stem-loop(if miRNA)	---     -   G            -    A      GUA                 AUAUUAAUUGAAAAUAAC    CAAGCUUUUAAGGCCA    AAUCC CUA UAAGUUAAAAUC UCUC CAAUCC   UCAAUUCCCUUCAAUCC                  CGAA                U    ||||| ||| |||||||||||| |||| ||||||   |||||||||||||||||                  ||||    UUAGG GAU GUUCAGUUUUAG AGAG GUUGGG   GGUUAGGGGGAGUUAGG                  ACUA                G AGU     A   -            U    -      AAA                 ---------------GAU    AAACCCUAGUUUGCUU
Stem-loop sequence	AAUCCCUAGUAAGUUAAAAUCUCUCACAAUCCGUAUCAAUUCCCUUCAAUCCAUAUUAAUUGAAAAUAACCGAACAAGCUUUUAAGGCCAUGUUCGUUUGAUCCCAAAAUCAUAGGGAUUGAGGGGGAUUGGAAAGGGUUGGAGAUGAUUUUGACUUGUAGAGGAUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU948993.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   |||||||||=|||||||||||||| targets:562   AGAGAUUUUGACUUACUAGGGAUU   585 Target Full Sequence	1.0	Zea mays clone 393064 mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   |||||||||=||||=||||||||| targets:816   AGAGAUUUUGACUUGCUAGGGAUU   839 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   ||=||||||=|||||||||||||| targets:70   AGGGAUUUUGACUUACUAGGGAUU   93 Target Full Sequence	1.0	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =|=||||||=|||||||||||||| targets:1936   GGGGAUUUUGACUUACUAGGGAUU   1959 Target Full Sequence	1.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =|=||||||=|||||||||||||| targets:1575   GGGGAUUUUGACUUACUAGGGAUU   1598 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =|=||||||=|||||||||||||| targets:1575   GGGGAUUUUGACUUACUAGGGAUU   1598 Target Full Sequence	1.0	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   ||=||||||=||||=||||||||| targets:47   AGGGAUUUUGACUUGCUAGGGAUU   70 Target Full Sequence	2.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   ||=||||||=||||=||||||||| targets:47   AGGGAUUUUGACUUGCUAGGGAUU   70 Target Full Sequence	2.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   ||=||||||=||||=||||||||| targets:47   AGGGAUUUUGACUUGCUAGGGAUU   70 Target Full Sequence	2.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
EU959771.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =||||||||*|||||||||||||| targets:1282   GGAGAUUUUCACUUACUAGGGAUU   1305 Target Full Sequence	1.0	Zea mays clone 219936 mRNA sequence	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   |||||||*|=|||||||||||||| targets:1040   AGAGAUUAUGACUUACUAGGGAUU   1063 Target Full Sequence	2.0	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
NM_001327795.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =||||||||*|||||||||||||| targets:1203   GGAGAUUUUCACUUACUAGGGAUU   1226 Target Full Sequence	1.0	Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA	NA	coding protein	psRNATarget
BT085188.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =||||||||*|||||||||||||| targets:1327   GGAGAUUUUCACUUACUAGGGAUU   1350 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT064813.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =||||||||*|||||||||||||| targets:1171   GGAGAUUUUCACUUACUAGGGAUU   1194 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT041645.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   =||||||||*|||||||||||||| targets:1286   GGAGAUUUUCACUUACUAGGGAUU   1309 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   ||=||||||=|||||*|||||||| targets:432   AGGGAUUUUGACUUAAUAGGGAUU   455 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
EU972313.1	ncRNA:21   CUAAAAUUGAAUGAUCCCUAA   1   ||||||=|||||||||||||| targets:1   GAUUUUGACUUACUAGGGAUU   21 Target Full Sequence	1.0	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ238567.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   |||*|||||=||||||||*||||| targets:41   AGACAUUUUGACUUACUAUGGAUU   64 Target Full Sequence	2.5	Sequence 4562 from Patent EP2985353	NA	coding protein	psRNATarget
HI406437.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   |||*|||||=||||||||*||||| targets:41   AGACAUUUUGACUUACUAUGGAUU   64 Target Full Sequence	2.5	Sequence 4562 from Patent EP2074227	NA	coding protein	psRNATarget
JB166898.1	ncRNA:24   UCUCUAAAAUUGAAUGAUCCCUAA   1   |||*|||||=||||||||*||||| targets:41   AGACAUUUUGACUUACUAUGGAUU   64 Target Full Sequence	2.5	Sequence 4562 from Patent EP2559767	NA	coding protein	psRNATarget