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BaseInfo

ncRNA ID	novel_zma_miR145
Species	Zea mays
Class	miRNA
Genome position	Chr3:50064537-50064586 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR5100248;SRR5100255;SRR2089700;SRR2089703;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - AGGAUUGGAGGAGAUUGAGGG - 21
Stem-loop(if miRNA)	--A          A      GG GG    GGAUUGGAGG GAUUGA  G  G    |||||||||| ||||||  |    CCUAACCUCC CUAACU  U  A AUA          C      AG AA
Stem-loop sequence	AGGAUUGGAGGAGAUUGAGGGGGGAAAUGAUCAAUCCCCUCCAAUCCAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235623.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   |||||||||*||||||||||| targets:35   CCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   |||||||||*||||||||||| targets:35   CCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   |||||||||*||||||||||| targets:35   CCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
HI403402.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =|||||||||||||=|||||* targets:70   UCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1527 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235532.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =|||||||||||||=|||||* targets:70   UCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1527 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235365.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =|||||||||||||=|||||* targets:70   UCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1360 from Patent EP2985353	NA	coding protein	psRNATarget
JB163863.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =|||||||||||||=|||||* targets:70   UCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1527 from Patent EP2559767	NA	coding protein	psRNATarget
HI403235.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =|||||||||||||=|||||* targets:70   UCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1360 from Patent EP2074227	NA	coding protein	psRNATarget
JB163696.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =|||||||||||||=|||||* targets:70   UCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	2.5	Sequence 1360 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =||||||||*||||||||||| targets:33   UCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
JB163816.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =||||||||*||||||||||| targets:33   UCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   =||||||||*||||||||||| targets:33   UCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   ||||=||||*||||||||||| targets:80   CCCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
BT088155.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   |=|||||||*||||||||||| targets:1466   CUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:21   GG-GAGUUAGAGGAGGUUAGGA   1   ||-||||||||||||||||||* targets:331   CCACUCAAUCUCCUCCAAUCCA   352 Target Full Sequence	3.0	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   *||||||||*||||||||||| targets:78   ACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   *||||||||*||||||||||| targets:44   ACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
EU964952.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   *|*|=|||||||||||||||| targets:14   GCAUUAAUCUCCUCCAAUCCU   34 Target Full Sequence	2.0	Zea mays clone 282757 proteasome subunit alpha type 7 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670635.2	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   *|||*|||||||||||||||* targets:62   ACCUAAAUCUCCUCCAAUCCA   82 Target Full Sequence	2.0	PREDICTED: Zea mays ABC transporter I family member 1 (LOC103645914), mRNA	NA	coding protein	psRNATarget
JB166405.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   **=|=|||||||||||||||* targets:84   GAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	3.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   **=|=|||||||||||||||* targets:84   GAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	3.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
HI405947.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   **=|=|||||||||||||||* targets:84   GAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	3.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   **=|=|||||||||||||||* targets:84   GAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	3.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   **=|=|||||||||||||||* targets:84   GAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	3.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
JB166408.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   **=|=|||||||||||||||* targets:84   GAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	3.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546009.1	ncRNA:21   GGGAGUUAGAGGAGGUUAGGA   1   ||||=**|||||||||||||| targets:41   CCCUUCCUCUCCUCCAAUCCU   61 Target Full Sequence	3.0	PREDICTED: Zea mays homeobox-leucine zipper protein ROC7 (LOC103641332), transcript variant X2, mRNA	NA	coding protein	psRNATarget