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BaseInfo

ncRNA ID	novel_zma_miR141
Species	Zea mays
Class	miRNA
Genome position	Chr3:8735786-8735873 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089706
Length	24
Mature sequence(if miRNA)	65 - AAUUCAUAUGGAUUGAGGGGGUUU - 88
Stem-loop(if miRNA)	--               -        UUAAUCCCUAUUAAGUCA   AAUUCAUAUGGAUUG AGGGGGUU                  A   ||||||||||||||| ||||||||                  A   UUAAGUAUACCUAAC UUCCCUAA                  A AG               C        CUAUACCUAAUCUCUCCU
Stem-loop sequence	AAUUCAUAUGGAUUGAGGGGGUUUUAAUCCCUAUUAAGUCAAAAUCCUCUCUAAUCCAUAUCAAUCCCUUCCAAUCCAUAUGAAUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ101759.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||||||||||||||||||||=||| targets:95   AAACCCCCUCAAUCCAUAUGGAUU   118 Target Full Sequence	1.5	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
EU959771.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||||||=|||||||||||||=||| targets:1307   AAACCCUCUCAAUCCAUAUGGAUU   1330 Target Full Sequence	2.5	Zea mays clone 219936 mRNA sequence	NA	coding protein	psRNATarget
NM_001327795.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||||||=|||||||||||||=||| targets:1228   AAACCCUCUCAAUCCAUAUGGAUU   1251 Target Full Sequence	2.5	Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA	NA	coding protein	psRNATarget
BT085188.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||||||=|||||||||||||=||| targets:1352   AAACCCUCUCAAUCCAUAUGGAUU   1375 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT064813.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||||||=|||||||||||||=||| targets:1196   AAACCCUCUCAAUCCAUAUGGAUU   1219 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT041645.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||||||=|||||||||||||=||| targets:1311   AAACCCUCUCAAUCCAUAUGGAUU   1334 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds	NA	coding protein	psRNATarget
EZ080006.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   |||=||||||||||||||||=||| targets:26   AAAUCCCCUCAAUCCAUAUGGAUU   49 Target Full Sequence	1.5	TSA: Zea mays contig15645, mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:1971   AAUCCCCCUCAAUCCAUAUGGAUU   1994 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:608   AAUCCCCCUCAAUCCAUAUGGAUU   631 Target Full Sequence	1.5	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:1211   AAUCCCCCUCAAUCCAUAUGGAUU   1234 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||=||||||||||||||||| targets:466   AAUCCCUCUCAAUCCAUAUGAAUU   489 Target Full Sequence	1.0	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:851   AAUCCCCCUCAAUCCAUAUGGAUU   874 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962 Target Full Sequence	1.5	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:939   AAUCCCCCUCAAUCCAUAUGGAUU   962 Target Full Sequence	1.5	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:909   AAUCCCCCUCAAUCCAUAUGGAUU   932 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:912   AAUCCCCCUCAAUCCAUAUGGAUU   935 Target Full Sequence	1.5	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:372   AAUCCCCCUCAAUCCAUAUGGAUU   395 Target Full Sequence	1.5	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	1.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	1.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||||||||||||||||=||| targets:82   AAUCCCCCUCAAUCCAUAUGGAUU   105 Target Full Sequence	1.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||||=||||||||||||=||| targets:978   AAUCCCCUUCAAUCCAUAUGGAUU   1001 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||||=||||||||||||=||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||||=||||||||||||=||| targets:1499   AAUCCCCUUCAAUCCAUAUGGAUU   1522 Target Full Sequence	2.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||||=||||||||||||=||| targets:1485   AAUCCCCUUCAAUCCAUAUGGAUU   1508 Target Full Sequence	2.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||||=||||||||||||=||| targets:1467   AAUCCCCUUCAAUCCAUAUGGAUU   1490 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||||=||||||||||||=||| targets:1423   AAUCCCCUUCAAUCCAUAUGGAUU   1446 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|||=|||||||||||||=||| targets:1075   AAUCCCUCUCAAUCCAUAUGGAUU   1098 Target Full Sequence	2.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UUUGGGGGAG-UUAGGUAUACUUAA   1   *||=||||||-|||||||||||||| targets:785   CAAUCCCCUCUAAUCCAUAUGAAUU   809 Target Full Sequence	2.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY110812.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   |||=|||=*||||||||||||||| targets:187   AAAUCCCUCCAAUCCAUAUGAAUU   210 Target Full Sequence	2.0	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||=||||||||||||||=||| targets:83   AAUCCUCCUCAAUCCAUAUGGAUU   106 Target Full Sequence	2.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||=||||||||||||||=||| targets:83   AAUCCUCCUCAAUCCAUAUGGAUU   106 Target Full Sequence	2.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*||=||||||||||||||=||| targets:83   AAUCCUCCUCAAUCCAUAUGGAUU   106 Target Full Sequence	2.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ||*|=||=||||||||||||=||| targets:3122   AAUCUCCUUCAAUCCAUAUGGAUU   3145 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   =|*||||=||||||||||||=||| targets:1700   GAUCCCCUUCAAUCCAUAUGGAUU   1723 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ***=||=||||||||||=|||||| targets:3185   CUUUCCUCUCAAUCCAUGUGAAUU   3208 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ***=||=||||||||||=|||||| targets:3154   CUUUCCUCUCAAUCCAUGUGAAUU   3177 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   ***=||=||||||||||=|||||| targets:3141   CUUUCCUCUCAAUCCAUGUGAAUU   3164 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT039694.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   =****|=||||||||||||||||| targets:1653   GUUAGCUCUCAAUCCAUAUGAAUU   1676 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147345.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   =****|=||||||||||||||||| targets:1653   GUUAGCUCUCAAUCCAUAUGAAUU   1676 Target Full Sequence	1.0	Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA	NA	coding protein	psRNATarget
BT062929.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   =****|=||||||||||||||||| targets:1552   GUUAGCUCUCAAUCCAUAUGAAUU   1575 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds	NA	coding protein	psRNATarget
EU956028.1	ncRNA:24   UUUGGGGGAGUUAGGUAUACUUAA   1   =****|=||||||||||||||||| targets:1463   GUUAGCUCUCAAUCCAUAUGAAUU   1486 Target Full Sequence	1.0	Zea mays clone 1555850 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget