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BaseInfo

ncRNA ID	novel_zma_miR140
Species	Zea mays
Class	miRNA
Genome position	Chr3:9110995-9111135 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR5451004;SRR5451005;SRR5451006
Length	24
Mature sequence(if miRNA)	118 - AUCGGACUGUCCGGUGUACACCAG - 141
Stem-loop(if miRNA)	--       U              A    U        CUCCAA  AA       -CUCCA   C  G UA   AUCGGAC GUCCGGUGUACACC GACA GUCCGGUG      GG  GAGCGGC      GAA UC C  G   ||||||| |||||||||||||| |||| ||||||||      ||  |||||||      ||| || |  C   UGGCCUG CAGGCCACAUGUGG CUGU CAGGCCAC      UC  CUCGUCG      CUU AG G  C UG       U              C    -        UUAAAA  GC       ACUUUA   A  G CU
Stem-loop sequence	AUCGGACUGUCCGGUGUACACCAGACAUGUCCGGUGCUCCAAGGAAGAGCGGCCUCCAGAACUCGCUAGCCUCGGGAAUUCAUUUCAGCUGCUCCGCUAAAAUUCACCGGACUGUCCGGUGUACACCGGACUGUCCGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241481.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||||||||||||||||||=| targets:29   CCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	1.5	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
HI409351.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||||||||||||||||||=| targets:29   CCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	1.5	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
JB169812.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||||||||||||||||||=| targets:29   CCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	1.5	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
EU950973.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*|||||=||||||||||||||=| targets:181   CCGGUGUGCACCGGACAGUCCGGU   204 Target Full Sequence	2.5	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:408   CCGGUGCACACCGGACAGUCCGGU   431 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   **||||*|||||||||||||||=| targets:294   ACGGUGCACACCGGACAGUCCGGU   317 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
LQ242178.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:108   CCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	2.5	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
HI410048.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:108   CCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	2.5	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
JB170509.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:108   CCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	2.5	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:469   CCGGUGCACACCGGACAGUCCGGU   492 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:599   CCGGUGCACACCGGACAGUCCGGU   622 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:741   CCGGUGCACACCGGACAGUCCGGU   764 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:621   CCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:735   CCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:621   CCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:735   CCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   *|||-||=||||||||||||||=| targets:588   AUGG-GUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   *|||-||=||||||||||||||=| targets:588   AUGG-GUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:713   CCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   GACCACAUG-UGGCCUGUCAGGCUA   1   |*||||*||-||||||||||||||| targets:815   CCGGUGCACCACCGGACAGUCCGAU   839 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:713   CCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   GACCACAUG-UGGCCUGUCAGGCUA   1   |*||||*||-||||||||||||||| targets:815   CCGGUGCACCACCGGACAGUCCGAU   839 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:282   CCGGUGCACACCGGACAGUCCGGU   305 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:696   CCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:696   CCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:446   CCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:560   CCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:446   CCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:560   CCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:1398   CCGGUGCACACCGGACAGUCCGGU   1421 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:4493   CCGGUGCACACCGGACAGUCCGGU   4516 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   |*||||*|||||||||||||||=| targets:4608   CCGGUGCACACCGGACAGUCCGGU   4631 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
JB167053.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   **|**||=||||||||||||=||| targets:3   AGGAGGUGCACCGGACAGUCUGAU   26 Target Full Sequence	2.5	Sequence 4717 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238722.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   **|**||=||||||||||||=||| targets:3   AGGAGGUGCACCGGACAGUCUGAU   26 Target Full Sequence	2.5	Sequence 4717 from Patent EP2985353	NA	coding protein	psRNATarget
HI406592.1	ncRNA:24   GACCACAUGUGGCCUGUCAGGCUA   1   **|**||=||||||||||||=||| targets:3   AGGAGGUGCACCGGACAGUCUGAU   26 Target Full Sequence	2.5	Sequence 4717 from Patent EP2074227	NA	coding protein	psRNATarget