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BaseInfo

ncRNA ID osa-miR5531
Species Oryza sativa
Class miRNA
Genome position Chr3:10288528-10288615 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 16 - ACUGACUGCCUUGAGCUCCGGG - 37
Stem-loop(if miRNA) G   UCAAG  G  G    ACU      A     ---  -   U  U
 GAU     CU GU ACUG   GCCUUG GCUCC   GG GCA GG U
 |||     || || ||||   |||||| |||||   || ||| || C
 CUA     GG CG UGAC   CGGAGU UGAGG   UC CGU CC U
A   ---UA  G  -    -GU      A     AGU  A   U  A
Stem-loop sequence GGAUUCAAGCUGGUGACUGACUGCCUUGAGCUCCGGGCAUGGUUCUACCUUGCACUUGAGGAGUAUGAGGCUGCAGUGCGGGAUAUCA

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).