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BaseInfo

ncRNA ID	novel_zma_miR128
Species	Zea mays
Class	miRNA
Genome position	Chr3:60962882-60963017 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR2089714;SRR2089705
Length	24
Mature sequence(if miRNA)	113 - AAGGGCUGAUUUGGUGAUUAGGGA - 136
Stem-loop(if miRNA)	-AA   -             UA           GG   C           --    C    CA     A    GGG CUGAUUUGGUGAU  GGGAUCCCGAG  GAU CAUGGGGAGAA  AUCC CUUG  AUUCA U    ||| |||||||||||||  |||||||||||  ||| |||||||||||  |||| ||||  |||||    UCC GACUAAACCACUA  CCCUAGGGCUC  CUA GUACCCCUCUU  UAGG GAAC  UAAGU U GAA   A             GC           UA   A           UU    A    AA     U
Stem-loop sequence	AAGGGCUGAUUUGGUGAUUAGGGAUCCCGAGGGGAUCCAUGGGGAGAAAUCCCCUUGCAAUUCAAUUUUGAAUAACAAGAGGAUUUUUCUCCCCAUGAAUCAUCUCGGGAUCCCCGAUCACCAAAUCAGACCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068562.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||||||||||||||=||||||| targets:1078   UCCCUAAUCACCAAAUUAGCCCUU   1101 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0331B04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||=|||| targets:4511   UCCCUAAUCACCAAAUCAGUCCUU   4534 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||=|||| targets:4685   UCCCUAAUCACCAAAUCAGUCCUU   4708 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552825.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||=|||| targets:4776   UCCCUAAUCACCAAAUCAGUCCUU   4799 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||==||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||==||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||==||||||||||||||||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
EU941266.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||||||||=||||||||||||* targets:687   UCCCUAAUCAUCAAAUCAGCCCUA   710 Target Full Sequence	2.0	Zea mays clone 1435213 mRNA sequence	NA	coding protein	psRNATarget
BT018533.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||=||=||||=||||||||||||| targets:1919   UCUCUGAUCAUCAAAUCAGCCCUU   1942 Target Full Sequence	2.0	Zea mays clone EL01N0434E06.d mRNA sequence	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||||||||||||||||||||*| targets:153   UCCCUAAUCACCAAAUCAGCCCGU   176 Target Full Sequence	1.5	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||==||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	3.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||==||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	3.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||==||||||||||||||||* targets:97   UCCCUGGUCACCAAAUCAGCCCUA   120 Target Full Sequence	3.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
HI409984.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||=||||||||||||||*||| targets:114   UCCCUGAUCACCAAAUCAGCACUU   137 Target Full Sequence	2.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
JB170445.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||=||||||||||||||*||| targets:114   UCCCUGAUCACCAAAUCAGCACUU   137 Target Full Sequence	2.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||=||||||||||||||*||| targets:114   UCCCUGAUCACCAAAUCAGCACUU   137 Target Full Sequence	2.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||||*||||||||||||=|||| targets:455   UCCCUAUUCACCAAAUCAGUCCUU   478 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008649119.2	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |*||||||||||||||||||=||| targets:36   UACCUAAUCACCAAAUCAGCUCUU   59 Target Full Sequence	1.5	PREDICTED: Zea mays PHD transcription factor (PHD35), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538171.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||=|||||||||||||*|||| targets:2   UCCCUGAUCACCAAAUCAGACCUU   25 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI402947.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||||*|* targets:115   UCCCUAAUCACCAAAUCAGCCAUC   138 Target Full Sequence	2.5	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
JB163408.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||||*|* targets:115   UCCCUAAUCACCAAAUCAGCCAUC   138 Target Full Sequence	2.5	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235077.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||||||||||||||||*|* targets:115   UCCCUAAUCACCAAAUCAGCCAUC   138 Target Full Sequence	2.5	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||*|||||||||||||||* targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363 Target Full Sequence	2.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   |||||||*|||||||||||||||* targets:1340   UCCCUAACCACCAAAUCAGCCCUA   1363 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||*|||||||||||||||=||* targets:1494   UCCCGAAUCACCAAAUCAGCUCUA   1517 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EU950017.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||*==||||||||||||||||* targets:513   UCCCGGGUCACCAAAUCAGCCCUA   536 Target Full Sequence	3.0	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||*==||||||||||||||||* targets:1878   UCCCGGGUCACCAAAUCAGCCCUA   1901 Target Full Sequence	3.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||*==||||||||||||||||* targets:2316   UCCCGGGUCACCAAAUCAGCCCUA   2339 Target Full Sequence	3.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||||*==||||||||||||||||* targets:71   UCCCCGGUCACCAAAUCAGCCCUA   94 Target Full Sequence	3.0	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   *||||*=||||||||||||||||* targets:853   CCCCUUGUCACCAAAUCAGCCCUC   876 Target Full Sequence	3.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   *||||*=||||||||||||||||* targets:892   CCCCUUGUCACCAAAUCAGCCCUC   915 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   *||||*=||||||||||||||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   *||||*=||||||||||||||||* targets:897   CCCCUUGUCACCAAAUCAGCCCUC   920 Target Full Sequence	3.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
XM_008680925.2	ncRNA:24   AGGG-----------AUUAGUGGUUUAGUCGGGAA   1   ||||-----------|==||||||||||||||||| targets:1816   UCCCCUCCAAUUGCAUGGUCACCAAAUCAGCCCUU   1850 Target Full Sequence	2.0	PREDICTED: Zea mays 4-coumarate--CoA ligase-like 3 (LOC103654103), mRNA	NA	coding protein	psRNATarget
EU974244.1	ncRNA:24   AGGGAUUAGUGGUUUAGUCGGGAA   1   ||*|*==||||||||||||||||| targets:491   UCACCGGUCACCAAAUCAGCCCUU   514 Target Full Sequence	2.0	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   AGG-GAUUAGUGGUUUAGUCGGGAA   1   |||-||*=||||||||||||||||* targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   AGG-GAUUAGUGGUUUAGUCGGGAA   1   |||-||*=||||||||||||||||* targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   AGG-GAUUAGUGGUUUAGUCGGGAA   1   |||-||*=||||||||||||||||* targets:162   UCCACUUGUCACCAAAUCAGCCCUA   186 Target Full Sequence	3.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget