Search result

BaseInfo

ncRNA ID	novel_zma_miR125
Species	Zea mays
Class	miRNA
Genome position	Chr3:100220369-100220494 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089706;SRR2089707
Length	25
Mature sequence(if miRNA)	1 - AAAUACGAUUUCUAGUGGCGGGUUU - 25
Stem-loop(if miRNA)	--AA                -             ACUC         UC    AC             CCGCCACUAGAAAUCG AUUUCUACAGGCG    CUUAAGAAA  CGCC  UAGAAAUCA     |||||||||||||||| |||||||||||||    |||||||||  ||||  ||||||||U     GGCGGUGAUCUUUAGC UAAAGAUGUCCGC    GAAUUCUUU  GCGG  AUUUUUAGG UUUG                A             CAAA         UA    AC
Stem-loop sequence	AACCGCCACUAGAAAUCGAUUUCUACAGGCGACUCCUUAAGAAAUCCGCCACUAGAAAUCAUGGAUUUUUACAGGCGAUUUUCUUAAGAAACCGCCUGUAGAAAUACGAUUUCUAGUGGCGGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166343.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*||||||||||||||||||||| targets:37   AAAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	0.0	Sequence 4007 from Patent EP2559767	NA	coding protein	psRNATarget
HI405882.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*||||||||||||||||||||| targets:37   AAAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	0.0	Sequence 4007 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238012.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*||||||||||||||||||||| targets:37   AAAACCGCCACUAGAAAUCGUAUUU   61 Target Full Sequence	0.0	Sequence 4007 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235116.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*||||||||||||||||||||| targets:15   AAAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	0.0	Sequence 1111 from Patent EP2985353	NA	coding protein	psRNATarget
HI402986.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*||||||||||||||||||||| targets:15   AAAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	0.0	Sequence 1111 from Patent EP2074227	NA	coding protein	psRNATarget
JB163447.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*||||||||||||||||||||| targets:15   AAAACCGCCACUAGAAAUCGUAUUU   39 Target Full Sequence	0.0	Sequence 1111 from Patent EP2559767	NA	coding protein	psRNATarget
HI402984.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*|||=|||||||||||*||||| targets:15   AAAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	2.5	Sequence 1109 from Patent EP2074227	NA	coding protein	psRNATarget
JB163445.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*|||=|||||||||||*||||| targets:15   AAAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	2.5	Sequence 1109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235114.1	ncRNA:25   UUUGGGCGGUGAUCUUUAGCAUAAA   1   |||*|||=|||||||||||*||||| targets:15   AAAACCGUCACUAGAAAUCAUAUUU   39 Target Full Sequence	2.5	Sequence 1109 from Patent EP2985353	NA	coding protein	psRNATarget