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BaseInfo

ncRNA ID	novel_zma_miR123
Species	Zea mays
Class	miRNA
Genome position	Chr3:34134225-34134331 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713
Length	24
Mature sequence(if miRNA)	84 - AACUAAAGUGGAAUAAAUUGGAGG - 107
Stem-loop(if miRNA)	--    U                CUA       CA           C  UAAC   UCCA UUUAUUCCACUUUAGU   UAAAUUG  AAAUAUGGAAA UA    U   |||| ||||||||||||||||   |||||||  ||||||||||| ||    C   AGGU AAAUAAGGUGAAAUCA   AUUUAAC  UUUAUACCUUU AU    U GG    U                AUG       AG           U  UUUA
Stem-loop sequence	UCCAUUUUAUUCCACUUUAGUCUAUAAAUUGCAAAAUAUGGAAACUAUAACUCUAUUUUAUUUUCCAUAUUUGACAAUUUAGUAACUAAAGUGGAAUAAAUUGGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552869.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||||||||||||||||||||||* targets:1663   CCUCCAAUUUAUUCCACUUUAGUC   1686 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||||||||||||||||||||||* targets:24   CCUCCAAUUUAUUCCACUUUAGUC   47 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   ||||||||||||||||=||||||* targets:147   CCUCCAAUUUAUUCCAUUUUAGUC   170 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   ||||||*||||||||||||||||| targets:486   CCUCCAUUUUAUUCCACUUUAGUU   509 Target Full Sequence	1.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   ||||||*||||||||||||||||* targets:2993   CCUCCAUUUUAUUCCACUUUAGUC   3016 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   ||||||*||||||||||||||||* targets:2604   CCUCCAUUUUAUUCCACUUUAGUC   2627 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   =*|||||||||||||||||||||* targets:1146   UAUCCAAUUUAUUCCACUUUAGUC   1169 Target Full Sequence	1.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   =|||||*|||||||||=||||||| targets:1130   UCUCCACUUUAUUCCAUUUUAGUU   1153 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   =|||||*|||||||||=||||||| targets:1130   UCUCCACUUUAUUCCAUUUUAGUU   1153 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||=||*|||||||||=||||||| targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56 Target Full Sequence	2.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||=||*|||||||||=||||||| targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56 Target Full Sequence	2.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||=||*|||||||||=||||||| targets:33   CCUUCAUUUUAUUCCAUUUUAGUU   56 Target Full Sequence	2.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||*||*||||||||||||||||| targets:1921   CCUACAUUUUAUUCCACUUUAGUU   1944 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   GGAG-GUUAAAUAAGGUGAAAUCAA   1   |||=-||*||||||||||||||||| targets:1273   CCUUACAUUUUAUUCCACUUUAGUU   1297 Target Full Sequence	1.0	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||*||*|||||||||=||||||| targets:1003   CCUACAUUUUAUUCCAUUUUAGUU   1026 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   GGAGGUUAAAUAAGGUGAAAUCAA   1   |||*||*|||||||||=||||||| targets:583   CCUACAUUUUAUUCCAUUUUAGUU   606 Target Full Sequence	2.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403449.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1574 from Patent EP2074227	NA	coding protein	psRNATarget
JB163729.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1393 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235466.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1461 from Patent EP2985353	NA	coding protein	psRNATarget
HI403268.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1393 from Patent EP2074227	NA	coding protein	psRNATarget
HI403336.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1461 from Patent EP2074227	NA	coding protein	psRNATarget
JB163797.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1461 from Patent EP2559767	NA	coding protein	psRNATarget
JB163910.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1574 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235398.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1393 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235579.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||||*|||||||||=||||||| targets:1   UCCACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1574 from Patent EP2985353	NA	coding protein	psRNATarget
JB163859.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||=|*|||||||||=||||||| targets:1   UCUACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1523 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235528.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||=|*|||||||||=||||||| targets:1   UCUACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1523 from Patent EP2985353	NA	coding protein	psRNATarget
HI403398.1	ncRNA:22   AGGUUAAAUAAGGUGAAAUCAA   1   ||=|*|||||||||=||||||| targets:1   UCUACUUUAUUCCAUUUUAGUU   22 Target Full Sequence	2.5	Sequence 1523 from Patent EP2074227	NA	coding protein	psRNATarget