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BaseInfo

ncRNA ID	novel_zma_miR116
Species	Zea mays
Class	miRNA
Genome position	Chr3:145717163-145717369 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089708
Length	24
Mature sequence(if miRNA)	184 - UCAUGAUAUCAUAUGUAGAGGCUC - 207
Stem-loop(if miRNA)	--                       C         U  GAAAAA    C      ACUA   U            C            --UU     U    - U   UCAUGAUAUCAUAUGUAGAGGCU UGAUAAAAA UU      GUUU GAGAAA    UGA GCACUAUGUGUA AAACCUAAGAGA    CACAU GAAA C C   ||||||||||||||||||||||| ||||||||| ||      |||| ||||||    ||| |||||||||||| ||||||||||||    ||||| |||| | U   AGUACUAUAGUAUAUAUCUCCGA ACUAUUUUU AA      CAAA CUCUUU    ACU UGUGAUACACAU UUUGGAUUCUCU    GUGUA CUUU G A AC                       C         U  AUCUUA    C      CAAC   C            C            UGAU     -    A U
Stem-loop sequence	UCAUGAUAUCAUAUGUAGAGGCUCUGAUAAAAAUUUGAAAAAGUUUCGAGAAAACUAUGAUGCACUAUGUGUACAAACCUAAGAGAUUCACAUUGAAACUCUAUGAUUUCAUGUGUAGUUCUCUUAGGUUUCUACACAUAGUGUCUCACAACUUUCUCCAAACAUUCUAAAUUUUUUAUCACAGCCUCUAUAUAUGAUAUCAUGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ089840.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *||||||||||||||||||||||= targets:2   CAGCCUCUACAUAUGAUAUCAUGG   25 Target Full Sequence	1.0	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
JB163670.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|||||||||||||||||||||** targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229 Target Full Sequence	2.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
HI403209.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|||||||||||||||||||||** targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229 Target Full Sequence	2.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|||||||||||||||||||||** targets:206   CAGCCUCUACAUAUGAUAUCAUCU   229 Target Full Sequence	2.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*||||||=|||||||||||||| targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*||||||=|||||||||||||| targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*||||||=|||||||||||||| targets:200   CAACCUCUAUAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *||=|*|||||||||||||||||| targets:4025   UAGUCGCUACAUAUGAUAUCAUGA   4048 Target Full Sequence	1.0	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*|||*||||||||||||||||| targets:200   CAACCUGUACAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*|||*||||||||||||||||| targets:200   CAACCUGUACAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   CUCGGAGAUGUAUACUAUAGUACU   1   *|*|||*||||||||||||||||| targets:200   CAACCUGUACAUAUGAUAUCAUGA   223 Target Full Sequence	1.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget