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BaseInfo

ncRNA ID novel_zma_miR114
Species Zea mays
Class miRNA
Genome position Chr3:147675000-147675050 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089715;SRR2089707
Length 24
Mature sequence(if miRNA) 1 - AACCGUUCUGUAGUUGAACAGGCU - 24
Stem-loop(if miRNA) CAG     UG      AG     G
   CUGUU  ACUACA  AUGGU G
   |||||  ||||||  ||||| A
   GACAA  UGAUGU  UGCCA A
UCG     GU      CU     A
Stem-loop sequence CAGCUGUUUGACUACAAGAUGGUGGAAAACCGUUCUGUAGUUGAACAGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ240824.1
ncRNA:24   UCGGACAAGUUGAUGUCUUGCCAA   1
  |||||||||*||||||||*|||||
targets:10   AGCCUGUUCCACUACAGAUCGGUU   33

2.5 Sequence 6819 from Patent EP2985353 NA coding protein psRNATarget
JB169155.1
ncRNA:24   UCGGACAAGUUGAUGUCUUGCCAA   1
  |||||||||*||||||||*|||||
targets:10   AGCCUGUUCCACUACAGAUCGGUU   33

2.5 Sequence 6819 from Patent EP2559767 NA coding protein psRNATarget
HI408694.1
ncRNA:24   UCGGACAAGUUGAUGUCUUGCCAA   1
  |||||||||*||||||||*|||||
targets:10   AGCCUGUUCCACUACAGAUCGGUU   33

2.5 Sequence 6819 from Patent EP2074227 NA coding protein psRNATarget