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BaseInfo

ncRNA ID	novel_zma_miR111
Species	Zea mays
Class	miRNA
Genome position	Chr3:156005267-156005381 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089711;SRR2089714;SRR2287031;SRR2287159;SRR2287161;SRR2287163;SRR2287164;SRR2287165;SRR1997866;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089706;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AAAGUGGAAUAAAAUAGAGGGACU - 24
Stem-loop(if miRNA)	--      CAA                 AC  U     C              A      UCCCUC   UUUAUUCCACUUUAGUC  UA AUUGU AAAUAUGGAAACUA AAUA   ||||||   |||||||||||||||||  || ||||| |||||||||||||| |||G   AGGGAG   AAAUAAGGUGAAAUCGG  AU UAACG UUUAUACCUUUGAU UUGA UC      AUA                 AU  U     U              A
Stem-loop sequence	UCCCUCCAAUUUAUUCCACUUUAGUCACUAUAUUGUCAAAUAUGGAAACUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGGCUAAAGUGGAAUAAAAUAGAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647122.2	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*||||||||||||||| targets:2989   AGUCCCUCCAUUUUAUUCCACUUU   3012 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*||||||||||||||| targets:2600   AGUCCCUCCAUUUUAUUCCACUUU   2623 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*||||||||||||||| targets:482   AGUCCCUCCAUUUUAUUCCACUUU   505 Target Full Sequence	1.0	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:294   AGUCCCUCCAUUUUAUUCCAUUUU   317 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:169   AGUCCCUCCAUUUUAUUCCAUUUU   192 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|||||||||||=||| targets:78   AGUCCCUCCAUUUUAUUCCAUUUU   101 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||=|||*|||||||||||=||| targets:2151   AGUCUCUCCAUUUUAUUCCAUUUU   2174 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660555.2	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   |||||||**||||||||||||||| targets:1917   AGUCCCUACAUUUUAUUCCACUUU   1940 Target Full Sequence	2.0	PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|*||||||||||||| targets:1659   AGUCCCUCCAAUUUAUUCCACUUU   1682 Target Full Sequence	2.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   ||||||||*|*||||||||||||| targets:20   AGUCCCUCCAAUUUAUUCCACUUU   43 Target Full Sequence	2.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   UCAGGGAGAUAAAAUAAGGUGAAA   1   |||||=|**||||||||||||||| targets:1270   AGUCCUUACAUUUUAUUCCACUUU   1293 Target Full Sequence	3.0	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget