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BaseInfo

ncRNA ID osa-miR1866-3p
Species Oryza sativa
Class miRNA
Genome position Chr3:6510870-6510954 [+]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 52 - UGAAAUUCCUGUAAAAUUCUUG - 73
Stem-loop(if miRNA) -      -C   G                     CG      G
 CUUUUG  ACG AGGGAUUUUGCGGGAAUUUCA  GGAAUU A
 ||||||  ||| |||||||||||||||||||||  |||||| G
 GGAAAC  UGU UUCUUAAAAUGUCCUUAAAGU  CCUUAG U
A      CU   G                     --      U
Stem-loop sequence CUUUUGCACGGAGGGAUUUUGCGGGAAUUUCACGGGAAUUGAGUUGAUUCCUGAAAUUCCUGUAAAAUUCUUGUGUUCCAAAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015780228.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||=|||||||||||||||||||
targets:236   CAGGAAUUUUACAGGAAUUUCA   257

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326495 (LOC4326495), transcript variant X1, mRNA uncharacterized LOC4326495(LOC4326495) coding protein psRNATarget
XM_015766966.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||=|||||||||||||||||||
targets:750   CAGGAAUUUUACAGGAAUUUCA   771

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326467 (LOC4326467), transcript variant X2, mRNA uncharacterized LOC4326467(LOC4326467) coding protein psRNATarget
XM_015766964.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||=|||||||||||||||||||
targets:756   CAGGAAUUUUACAGGAAUUUCA   777

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326467 (LOC4326467), transcript variant X1, mRNA uncharacterized LOC4326467(LOC4326467) coding protein psRNATarget
XM_015766137.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||=|||||||||||||||*|||
targets:227   CAGGAAUUUUACAGGAAUAUCA   248

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324193 (LOC4324193), transcript variant X2, mRNA uncharacterized LOC4324193(LOC4324193) coding protein psRNATarget
XM_015766139.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||=|||||||||||||||*|||
targets:232   CAGGAAUUUUACAGGAAUAUCA   253

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324193 (LOC4324193), transcript variant X4, mRNA uncharacterized LOC4324193(LOC4324193) coding protein psRNATarget
XM_015766136.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||=|||||||||||||||*|||
targets:239   CAGGAAUUUUACAGGAAUAUCA   260

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324193 (LOC4324193), transcript variant X1, mRNA uncharacterized LOC4324193(LOC4324193) coding protein psRNATarget
XM_015785604.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  =|*|||||||=|||||||||||
targets:1443   UAUGAAUUUUGCAGGAAUUUCA   1464

1.5 PREDICTED: Oryza sativa Japonica Group fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like (LOC107276114), transcript variant X6, mRNA fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like(LOC107276114) coding protein psRNATarget
XM_015785588.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  =|*|||||||=|||||||||||
targets:1536   UAUGAAUUUUGCAGGAAUUUCA   1557

1.5 PREDICTED: Oryza sativa Japonica Group fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like (LOC107276114), transcript variant X3, mRNA fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like(LOC107276114) coding protein psRNATarget
XM_015785580.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  =|*|||||||=|||||||||||
targets:1557   UAUGAAUUUUGCAGGAAUUUCA   1578

1.5 PREDICTED: Oryza sativa Japonica Group fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like (LOC107276114), transcript variant X2, mRNA fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like(LOC107276114) coding protein psRNATarget
XM_015785572.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  =|*|||||||=|||||||||||
targets:1560   UAUGAAUUUUGCAGGAAUUUCA   1581

1.5 PREDICTED: Oryza sativa Japonica Group fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like (LOC107276114), transcript variant X1, mRNA fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic-like(LOC107276114) coding protein psRNATarget
AK288607.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||=*||||||||||||*|||||
targets:253   CAGAAAUUUUACAGGAUUUUCA   274

2.5 Oryza sativa Japonica Group cDNA, clone: J090053C17, full insert sequence NA coding protein psRNATarget
XM_015789831.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  ||*|||||*||||*||||||||
targets:1164   CAUGAAUUGUACAAGAAUUUCA   1185

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2-like (LOC107275770), mRNA disease resistance protein RGA2-like(LOC107275770) coding protein psRNATarget
AK107948.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  **=*||||||||||||*|||||
targets:880   AUGCAAUUUUACAGGAUUUUCA   901

2.5 Oryza sativa Japonica Group cDNA clone:002-135-B08, full insert sequence NA coding protein psRNATarget
CT833701.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  **=*||||||||||||*|||||
targets:962   AUGCAAUUUUACAGGAUUUUCA   983

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN039G15, full insert sequence NA coding protein psRNATarget
XM_015763464.1
ncRNA:22   GUUCUUAAAAUGUCCUUAAAGU   1
  **=*||||||||||||*|||||
targets:1399   AUGCAAUUUUACAGGAUUUUCA   1420

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351871 (LOC4351871), mRNA uncharacterized LOC4351871(LOC4351871) coding protein psRNATarget

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:19103661
"Characterization and expression profiles of miRNAs in rice seeds";
Xue LJ, Zhang JJ, Xue HW;
Nucleic Acids Res. 37:916-930(2009).
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