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BaseInfo

ncRNA ID	novel_zma_miR101
Species	Zea mays
Class	miRNA
Genome position	Chr3:5364316-5364420 [+]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2647386;SRR1583942
Length	24
Mature sequence(if miRNA)	1 - GUCUUUGCCGAGUGCCAAUUGGUA - 24
Stem-loop(if miRNA)	--G                A    U                   ACA     A    UCUUUGCCGAGUGCCA UUGG ACACUCGGCAAAGAGCCUG   UGGGG C    |||||||||||||||| |||| |||||||||||||||||||   ||||| C    AGAAACGGCUCACGGU AACC UGUGAGCCGUUUCUCGGGC   GUCCC C GGA                G    C                   --G     U
Stem-loop sequence	GUCUUUGCCGAGUGCCAAUUGGUACACUCGGCAAAGAGCCUGACAUGGGGACCCUCCCUGGCGGGCUCUUUGCCGAGUGUCCCAAGUGGCACUCGGCAAAGAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ237992.1	ncRNA:24   AUGG---UUAACCGUGAGCCGUUUCUG   1   *|||---||**|||||||||||||||* targets:210   AACCGACAAAAGGCACUCGGCAAAGAA   236 Target Full Sequence	3.0	Sequence 3987 from Patent EP2985353	NA	coding protein	psRNATarget
JB166323.1	ncRNA:24   AUGG---UUAACCGUGAGCCGUUUCUG   1   *|||---||**|||||||||||||||* targets:210   AACCGACAAAAGGCACUCGGCAAAGAA   236 Target Full Sequence	3.0	Sequence 3987 from Patent EP2559767	NA	coding protein	psRNATarget
HI405862.1	ncRNA:24   AUGG---UUAACCGUGAGCCGUUUCUG   1   *|||---||**|||||||||||||||* targets:210   AACCGACAAAAGGCACUCGGCAAAGAA   236 Target Full Sequence	3.0	Sequence 3987 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:24   AUGGUUAACCGUGAGCCGUUUCUG   1   |*|==*||||||||||||*||||| targets:468   UUCUGUUUGGCACUCGGCUAAGAC   491 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:24   AUGGUUAACCGUGAGCCGUUUCUG   1   |*|==*||||||||||||*||||| targets:720   UUCUGUUUGGCACUCGGCUAAGAC   743 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT067215.1	ncRNA:24   AUGGUUAACCGUGAGCCGUUUCUG   1   *||*=|**|||||||||||||||| targets:1267   CACAGAACGGCACUCGGCAAAGAC   1290 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT064046.1	ncRNA:24   AUGGUUAACCGUGAGCCGUUUCUG   1   *||*=|**|||||||||||||||| targets:1404   CACAGAACGGCACUCGGCAAAGAC   1427 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:24   AUGGUUAACCGUGAGCCGUUUCUG   1   *||*=|**|||||||||||||||| targets:1404   CACAGAACGGCACUCGGCAAAGAC   1427 Target Full Sequence	2.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget