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BaseInfo

ncRNA ID	novel_zma_miR93
Species	Zea mays
Class	miRNA
Genome position	Chr3:219140273-219140447 [-]
Reference genome	RefGen_v4
Source	SRR2089709
Length	23
Mature sequence(if miRNA)	153 - UGUCUGAAUGCACUAGAGCUAAU - 175
Stem-loop(if miRNA)	--   C                          U         A   -  A    AUUAAC   CUAACUAUUAACUAAUUUACUAAAAAUA   UGU UGAAUGCACUAGAGCUAAUAGUUAGU GGCUAAAAA UUA CU AAGA      UAG                            G   ||| |||||||||||||||||||||||||| ||||||||| ||| || ||||      |||   ACA ACUUACGUGAUCUCGAUUAUCAAUCA CUGAUUUUU AAU GA UUCU      GGU                            C CC   -                          -         -   C  C    ---GUA   UUAUGGGAUCGAUUAUCAAAUUGAUAAU
Stem-loop sequence	UGUCUGAAUGCACUAGAGCUAAUAGUUAGUUGGCUAAAAAAUUACUAAAGAAUUAACUAGCUAACUAUUAACUAAUUUACUAAAAAUAGCUAAUAGUUAAACUAUUAGCUAGGGUAUUUGGAUGUCUUCAGCUAAUUUUUAGUCACUAACUAUUAGCUCUAGUGCAUUCAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163503.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:9   AUUAGCUCUAGUGCAUUCAAACA   31 Target Full Sequence	1.5	Sequence 1167 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235172.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:9   AUUAGCUCUAGUGCAUUCAAACA   31 Target Full Sequence	1.5	Sequence 1167 from Patent EP2985353	NA	coding protein	psRNATarget
HI403042.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:9   AUUAGCUCUAGUGCAUUCAAACA   31 Target Full Sequence	1.5	Sequence 1167 from Patent EP2074227	NA	coding protein	psRNATarget
JB163468.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:143   AUUAGCUCUAGUGCAUUCAAACA   165 Target Full Sequence	1.5	Sequence 1132 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235137.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:143   AUUAGCUCUAGUGCAUUCAAACA   165 Target Full Sequence	1.5	Sequence 1132 from Patent EP2985353	NA	coding protein	psRNATarget
HI403007.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:143   AUUAGCUCUAGUGCAUUCAAACA   165 Target Full Sequence	1.5	Sequence 1132 from Patent EP2074227	NA	coding protein	psRNATarget
JB167439.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:11   AUUAGCUCUAGUGCAUUCAAACA   33 Target Full Sequence	1.5	Sequence 5103 from Patent EP2559767	NA	coding protein	psRNATarget
HI406978.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:11   AUUAGCUCUAGUGCAUUCAAACA   33 Target Full Sequence	1.5	Sequence 5103 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239108.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:11   AUUAGCUCUAGUGCAUUCAAACA   33 Target Full Sequence	1.5	Sequence 5103 from Patent EP2985353	NA	coding protein	psRNATarget
BT067062.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:1176   AUUAGCUCUAGUGCAUUCAAACA   1198 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549505.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:433   AUUAGCUCUAGUGCAUUCAAACA   455 Target Full Sequence	1.5	PREDICTED: Zea mays Protein LSD1 (cl889_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT036471.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:705   AUUAGCUCUAGUGCAUUCAAACA   727 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0118B10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139105.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:819   AUUAGCUCUAGUGCAUUCAAACA   841 Target Full Sequence	1.5	Zea mays SWR1 complex subunit 6 (LOC100194045), mRNA	NA	coding protein	psRNATarget
EU974177.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:819   AUUAGCUCUAGUGCAUUCAAACA   841 Target Full Sequence	1.5	Zea mays clone 442071 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU943162.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:1747   AUUAGCUCUAGUGCAUUCAAACA   1769 Target Full Sequence	1.5	Zea mays clone 1574300 mRNA sequence	NA	coding protein	psRNATarget
XM_008657422.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:4209   AUUAGCUCUAGUGCAUUCAAACA   4231 Target Full Sequence	1.5	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC103634832), mRNA	NA	coding protein	psRNATarget
XM_020542354.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:4403   AUUAGCUCUAGUGCAUUCAAACA   4425 Target Full Sequence	1.5	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658477.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:4403   AUUAGCUCUAGUGCAUUCAAACA   4425 Target Full Sequence	1.5	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:830   AUUAGCUCUAGUGCAUUCAAACA   852 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||||||||||||||*||| targets:2121   AUUAGCUCUAGUGCAUUCAAACA   2143 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   ||||*||||||||||||||*||| targets:1277   AUUACCUCUAGUGCAUUCAAACA   1299 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ105418.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:50   AUUAGUUCUAGUGCAUUCAAACA   72 Target Full Sequence	2.5	TSA: Zea mays contig41075, mRNA sequence	NA	coding protein	psRNATarget
HI403037.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||=|||||||||||*||| targets:178   AUUAGCUUUAGUGCAUUCAAACA   200 Target Full Sequence	2.5	Sequence 1162 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235167.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||=|||||||||||*||| targets:178   AUUAGCUUUAGUGCAUUCAAACA   200 Target Full Sequence	2.5	Sequence 1162 from Patent EP2985353	NA	coding protein	psRNATarget
JB163498.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||=|||||||||||*||| targets:178   AUUAGCUUUAGUGCAUUCAAACA   200 Target Full Sequence	2.5	Sequence 1162 from Patent EP2559767	NA	coding protein	psRNATarget
BT038068.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:733   AUUAGUUCUAGUGCAUUCAAACA   755 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0210C05 mRNA, complete cds	NA	coding protein	psRNATarget
BT054486.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:1880   AUUAGUUCUAGUGCAUUCAAACA   1902 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0087I09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678485.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:2972   AUUAGUUCUAGUGCAUUCAAACA   2994 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008678483.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:3424   AUUAGUUCUAGUGCAUUCAAACA   3446 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678484.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:3405   AUUAGUUCUAGUGCAUUCAAACA   3427 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001317389.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:3426   AUUAGUUCUAGUGCAUUCAAACA   3448 Target Full Sequence	2.5	Zea mays Retinoblastoma-related protein 1 (LOC100217179), mRNA	NA	coding protein	psRNATarget
XM_008678482.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:3423   AUUAGUUCUAGUGCAUUCAAACA   3445 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646094.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||||=|||||||||||*||| targets:778   AUUAGCUUUAGUGCAUUCAAACA   800 Target Full Sequence	2.5	PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545827.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||||=|||||||||||||*||| targets:1076   AUUAGUUCUAGUGCAUUCAAACA   1098 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020552868.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   *||||||||||||||||||*||| targets:475   UUUAGCUCUAGUGCAUUCAAACA   497 Target Full Sequence	1.5	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   *||||||||||||||||||*||| targets:477   UUUAGCUCUAGUGCAUUCAAACA   499 Target Full Sequence	1.5	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001177091.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||=|=|||||||||||||*||| targets:733   AUUGGUUCUAGUGCAUUCAAACA   755 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384586 (LOC100384586), mRNA	NA	coding protein	psRNATarget
BT083710.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||=|=|||||||||||||*||| targets:733   AUUGGUUCUAGUGCAUUCAAACA   755 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0030M14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008657108.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||=|=|||||||||||||*||| targets:1989   AUUGGUUCUAGUGCAUUCAAACA   2011 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384586 (LOC100384586), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657107.2	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   |||=|=|||||||||||||*||| targets:2037   AUUGGUUCUAGUGCAUUCAAACA   2059 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384586 (LOC100384586), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163475.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   **|||||||||||||||||*||| targets:138   UAUAGCUCUAGUGCAUUCAAACA   160 Target Full Sequence	1.5	Sequence 1139 from Patent EP2559767	NA	coding protein	psRNATarget
HI403014.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   **|||||||||||||||||*||| targets:138   UAUAGCUCUAGUGCAUUCAAACA   160 Target Full Sequence	1.5	Sequence 1139 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235144.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   **|||||||||||||||||*||| targets:138   UAUAGCUCUAGUGCAUUCAAACA   160 Target Full Sequence	1.5	Sequence 1139 from Patent EP2985353	NA	coding protein	psRNATarget
EU945766.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   =|||*||||||||||||||*||| targets:366   GUUAACUCUAGUGCAUUCAAACA   388 Target Full Sequence	2.5	Zea mays clone 285090 mRNA sequence	NA	coding protein	psRNATarget
BT040655.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   *|||||*||||||||||||*||| targets:1240   UUUAGCACUAGUGCAUUCAAACA   1262 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0110I03 mRNA, complete cds	NA	coding protein	psRNATarget
EU962311.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   *|||||*||||||||||||*||| targets:1245   UUUAGCACUAGUGCAUUCAAACA   1267 Target Full Sequence	2.5	Zea mays clone 241715 cytosolic 5-nucleotidase III mRNA, complete cds	NA	coding protein	psRNATarget
EU967075.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   *|||||*||||||||||||*||| targets:1252   UUUAGCACUAGUGCAUUCAAACA   1274 Target Full Sequence	2.5	Zea mays clone 299314 cytosolic 5-nucleotidase III mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156991.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   *|||||*||||||||||||*||| targets:1252   UUUAGCACUAGUGCAUUCAAACA   1274 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284093 (pco072227), mRNA	NA	coding protein	psRNATarget
HI403063.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   ||*||||*|||||||||||*||| targets:192   AUCAGCUAUAGUGCAUUCAAACA   214 Target Full Sequence	2.5	Sequence 1188 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235193.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   ||*||||*|||||||||||*||| targets:192   AUCAGCUAUAGUGCAUUCAAACA   214 Target Full Sequence	2.5	Sequence 1188 from Patent EP2985353	NA	coding protein	psRNATarget
JB163524.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   ||*||||*|||||||||||*||| targets:192   AUCAGCUAUAGUGCAUUCAAACA   214 Target Full Sequence	2.5	Sequence 1188 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235269.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   ||*||||*|||||||||||*||| targets:193   AUCAGCUAUAGUGCAUUCAAACA   215 Target Full Sequence	2.5	Sequence 1264 from Patent EP2985353	NA	coding protein	psRNATarget
JB163600.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   ||*||||*|||||||||||*||| targets:193   AUCAGCUAUAGUGCAUUCAAACA   215 Target Full Sequence	2.5	Sequence 1264 from Patent EP2559767	NA	coding protein	psRNATarget
HI403139.1	ncRNA:23   UAAUCGAGAUCACGUAAGUCUGU   1   ||*||||*|||||||||||*||| targets:193   AUCAGCUAUAGUGCAUUCAAACA   215 Target Full Sequence	2.5	Sequence 1264 from Patent EP2074227	NA	coding protein	psRNATarget