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BaseInfo

ncRNA ID	osa-miR812s
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:6033231-6033401 [-]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	11 - AAGACGGACAAUCAAACGUUGGAC - 34
Stem-loop(if miRNA)	U      UC    A    --A    C            U         -------------------------------A   AAAAAUUAAAAAAAUCACA  GGGUUU  GUGU CAAC   UGAU GUUCGUCUUAUU GAAAAUUUU                                UGA                   C  ||||||  |||| ||||   |||| |||||||||||| |||||||||                                |||  CUUAAA  CACA GUUG   ACUA CAGGCAGAAUAA UUUUUAAGA                                UAU                   A -      GA    G    CAA    A            -         AAACACUAAUCAUAAAAAUAAUAAUAACCUAC   UUUAUACUUAUCAUGAAAU
Stem-loop sequence	UGGGUUUUCGUGUACAACAUGAUCGUUCGUCUUAUUUGAAAAUUUUAUGAAAAAAUUAAAAAAAUCACACAUAAAGUACUAUUCAUAUUUUAUCAUCCAAUAAUAAUAAAAAUACUAAUCACAAAAGAAUUUUUAAUAAGACGGACAAUCAAACGUUGGACACAGAAAUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236677.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   ||||||=||||||||||||||=|| targets:3   GUCCAAUGUUUGAUUGUCCGUUUU   26 Target Full Sequence	2.5	Sequence 2672 from Patent EP2985353	NA	coding protein	psRNATarget
HI404547.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   ||||||=||||||||||||||=|| targets:3   GUCCAAUGUUUGAUUGUCCGUUUU   26 Target Full Sequence	2.5	Sequence 2672 from Patent EP2074227	NA	coding protein	psRNATarget
JB165008.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   ||||||=||||||||||||||=|| targets:3   GUCCAAUGUUUGAUUGUCCGUUUU   26 Target Full Sequence	2.5	Sequence 2672 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015772621.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   |||||||||||||*|||||||||| targets:409   GUCCAACGUUUGACUGUCCGUCUU   432 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget
AK106598.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   ||==||=||||||||||||||||| targets:2074   GUUUAAUGUUUGAUUGUCCGUCUU   2097 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-112-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   |||||||||||||*|||||||||| targets:1218   GUCCAACGUUUGACUGUCCGUCUU   1241 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK287584.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   |||||||||||||*|||||||||| targets:1195   GUCCAACGUUUGACUGUCCGUCUU   1218 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   |||||||||||||*|||||||||| targets:1190   GUCCAACGUUUGACUGUCCGUCUU   1213 Target Full Sequence	1.5	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
XM_015784718.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   ||||||=||||||*|||||||||| targets:1394   GUCCAAUGUUUGACUGUCCGUCUU   1417 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group basic 7S globulin (LOC4326528), mRNA	basic 7S globulin(LOC4326528)	coding protein	psRNATarget
AK289090.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   *||||||||||||*|||||||||| targets:854   AUCCAACGUUUGACUGUCCGUCUU   877 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090095N19, full insert sequence	NA	coding protein	psRNATarget
CT833626.1	ncRNA:24   CAGGUUGCAAACUAACAGGCAGAA   1   |||=||=||||||*|||||||||| targets:1080   GUCUAAUGUUUGACUGUCCGUCUU   1103 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN067K22, full insert sequence	NA	coding protein	psRNATarget
XM_015764917.1	ncRNA:24   CA-GGUUGCAAACUAACAGGCAGAA   1   ||-|||||||||||*|||||||||| targets:2784   GUGCCAACGUUUGACUGUCCGUCUU   2808 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group translocase of chloroplast 90, chloroplastic (LOC4351723), mRNA	translocase of chloroplast 90, chloroplastic(LOC4351723)	coding protein	psRNATarget
AK066050.1	ncRNA:24   CA-GGUUGCAAACUAACAGGCAGAA   1   ||-==|||||||*|||||||||||| targets:572   GUGUUAACGUUUAAUUGUCCGUCUU   596 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013050F13, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).