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BaseInfo

ncRNA ID novel_zma_miR88
Species Zea mays
Class miRNA
Genome position Chr10:62825525-62825585 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089713;SRR2089708
Length 21
Mature sequence(if miRNA) 41 - CUCGGGCGGGAGAUGCAGUCA - 61
Stem-loop(if miRNA) --          AG    A  --CAU     G
  CUCGGGCGGG  AUGC GU     GCCUC C
  ||||||||||  |||| ||     |||||
  GAGCCCGCUC  UAUG CA     CGGAG U
CG          GG    -  CCAAC     C
Stem-loop sequence CUCGGGCGGGAGAUGCAGUCAUGCCUCGCUCGAGGCCAACCACGUAUGGCUCGCCCGAGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008674168.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:533   UGACUGCGUCUCCUGCCCGAG   553

2.5 PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674168.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:453   UGACCGCGUCUCCCGCCCGAG   473

2.0 PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008674166.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:545   UGACUGCGUCUCCUGCCCGAG   565

2.5 PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674166.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:465   UGACCGCGUCUCCCGCCCGAG   485

2.0 PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550369.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1674   UGACUGCGUCUCCUGCCCGAG   1694

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X13, mRNA NA coding protein psRNATarget
XM_020550369.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1594   UGACCGCGUCUCCCGCCCGAG   1614

2.0 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X13, mRNA NA coding protein psRNATarget
XM_008676312.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1674   UGACUGCGUCUCCUGCCCGAG   1694

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008676312.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1594   UGACCGCGUCUCCCGCCCGAG   1614

2.0 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550368.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1674   UGACUGCGUCUCCUGCCCGAG   1694

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X12, mRNA NA coding protein psRNATarget
XM_020550368.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1594   UGACCGCGUCUCCCGCCCGAG   1614

2.0 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X12, mRNA NA coding protein psRNATarget
XM_008674165.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1644   UGACUGCGUCUCCUGCCCGAG   1664

2.5 PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674165.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1564   UGACCGCGUCUCCCGCCCGAG   1584

2.0 PREDICTED: Zea mays Cytosolic sulfotransferase 17 (LOC100273019), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676315.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1674   UGACUGCGUCUCCUGCCCGAG   1694

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008676315.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1594   UGACCGCGUCUCCCGCCCGAG   1614

2.0 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008676313.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1674   UGACUGCGUCUCCUGCCCGAG   1694

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X11, mRNA NA coding protein psRNATarget
XM_008676313.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1594   UGACCGCGUCUCCCGCCCGAG   1614

2.0 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X11, mRNA NA coding protein psRNATarget
XM_008676314.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1674   UGACUGCGUCUCCUGCCCGAG   1694

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008676314.2
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1594   UGACCGCGUCUCCCGCCCGAG   1614

2.0 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550366.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  |||||||=|||||=|||||||
targets:1674   UGACUGCGUCUCCUGCCCGAG   1694

2.5 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020550366.1
ncRNA:21   ACUGACGUAGAGGGCGGGCUC   1
  ||||*||=|||||||||||||
targets:1594   UGACCGCGUCUCCCGCCCGAG   1614

2.0 PREDICTED: Zea mays cytosolic sulfotransferase 8 (LOC103650749), transcript variant X9, mRNA NA coding protein psRNATarget
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