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BaseInfo

ncRNA ID novel_zma_miR87
Species Zea mays
Class miRNA
Genome position Chr3:225096738-225096792 [-]
Reference genome RefGen_v4
Source SRR2089709
Length 23
Mature sequence(if miRNA) 1 - CGGACUGUCCGGUGCGCCCGUCA - 23
Stem-loop(if miRNA) --  U   A         GU        
  GC GGC CACCGGACA  GUCCGGUGG
  || ||| |||||||||  ||||||||C
  UG CCG GUGGCCUGU  CAGGCCACG
AC  C   C         --        
Stem-loop sequence GCUGGCACACCGGACAGUGUCCGGUGGCGCACCGGACUGUCCGGUGCGCCCGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ108756.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *||=|||||||||||||||||||
targets:143   CGAUGGGCGCACCGGACAGUCCG   165

0.0 TSA: Zea mays contig44415, mRNA sequence NA coding protein psRNATarget
BT061124.2
ncRNA:23   ACU---GCCCGCGUGGCCUGUCAGGC   1
  |||---||||||||||||||||||||
targets:326   UGAGCACGGGCGCACCGGACAGUCCG   351

0.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:23   ACU---GCCCGCGUGGCCUGUCAGGC   1
  |||---||||||||||||||||||||
targets:326   UGAGCACGGGCGCACCGGACAGUCCG   351

0.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001174416.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *||=|||=|||||||||||||||
targets:586   CGAUGGGUGCACCGGACAGUCCG   608

1.0 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
NM_001174416.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **=|*||=|||||||||||||||
targets:820   CCGCUGGUGCACCGGACAGUCCG   842

2.0 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *||=|||=|||||||||||||||
targets:586   CGAUGGGUGCACCGGACAGUCCG   608

1.0 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT061709.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **=|*||=|||||||||||||||
targets:820   CCGCUGGUGCACCGGACAGUCCG   842

2.0 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:23   ACUGC--CCGCGUGGCCUGUCAGGC   1
  *||||--||||||||||||||||||
targets:596   AGACGUUGGCGCACCGGACAGUCCG   620

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:23   ACUGC---CCGCGUGGCCUGUCAGGC   1
  ||*||---||||||||||||||||||
targets:499   UGUCGCCUGGCGCACCGGACAGUCCG   524

3.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:23   ACUGC--CCGCGUGGCCUGUCAGGC   1
  *||||--||||||||||||||||||
targets:596   AGACGUUGGCGCACCGGACAGUCCG   620

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:23   ACUGC---CCGCGUGGCCUGUCAGGC   1
  ||*||---||||||||||||||||||
targets:499   UGUCGCCUGGCGCACCGGACAGUCCG   524

3.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *|*||||||||||||||||||||
targets:494   CGUCGGGCGCACCGGACAGUCCG   516

0.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *|*||||||||||||||||||||
targets:494   CGUCGGGCGCACCGGACAGUCCG   516

0.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
EU940974.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *|||*||||||||||||||||||
targets:2537   CGACUGGCGCACCGGACAGUCCG   2559

1.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
NM_001175949.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***||||||||||||||||||||
targets:482   CAUCGGGCGCACCGGACAGUCCG   504

0.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  *||-|*||||||||||||||||||
targets:577   AGAUCUGGCGCACCGGACAGUCCG   600

1.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***||||||||||||||||||||
targets:482   CAUCGGGCGCACCGGACAGUCCG   504

0.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  *||-|*||||||||||||||||||
targets:577   AGAUCUGGCGCACCGGACAGUCCG   600

1.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
XM_020546123.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***||||||||||||||||||||
targets:4376   CAUCGGGCGCACCGGACAGUCCG   4398

0.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
BT065201.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *|*||||=|||||||||||||||
targets:583   CGUCGGGUGCACCGGACAGUCCG   605

1.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:23   ACUGCC-CGCGUGGCCUGUCAGGC   1
  ***|||-||*||||||||||||||
targets:739   GUCCGGUGCACACCGGACAGUCCG   762

3.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *|*||||=|||||||||||||||
targets:135   CGUCGGGUGCACCGGACAGUCCG   157

1.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:23   ACUGCC-CGCGUGGCCUGUCAGGC   1
  ***|||-||*||||||||||||||
targets:280   GUCCGGUGCACACCGGACAGUCCG   303

3.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
EZ066204.1
ncRNA:23   ACUGC---CCGCGUGGCCUGUCAGGC   1
  ||*||---||||||||||||||||||
targets:85   UGUCGCAUGGCGCACCGGACAGUCCG   110

3.0 TSA: Zea mays contig01838, mRNA sequence NA coding protein psRNATarget
BT068112.2
ncRNA:23   ACUGC---CCGCGUGGCCUGUCAGGC   1
  ||*||---||||||||||||||||||
targets:370   UGUCGUCUGGCGCACCGGACAGUCCG   395

3.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:23   ACUGC---CCGCGUGGCCUGUCAGGC   1
  ||*||---||||||||||||||||||
targets:469   UGUCGCAUGGCGCACCGGACAGUCCG   494

3.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **=|*|||*||||||||||||||
targets:694   CCGCUGGCACACCGGACAGUCCG   716

2.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
NM_001175715.1
ncRNA:23   ACUGC---CCGCGUGGCCUGUCAGGC   1
  ||*||---||||||||||||||||||
targets:485   UGUCGAGUGGCGCACCGGACAGUCCG   510

3.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
BT066013.2
ncRNA:23   ACUGC---CCGCGUGGCCUGUCAGGC   1
  ||*||---||||||||||||||||||
targets:485   UGUCGAGUGGCGCACCGGACAGUCCG   510

3.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
EU970212.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  ||=-|*||||||||||||*|||||
targets:397   UGGUCUGGCGCACCGGACUGUCCG   420

2.5 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU970212.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **=**||||||||||||*|||||
targets:737   CCGGUGGCGCACCGGACUGUCCG   759

2.5 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU952168.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  ||=-|*||||||||||||*|||||
targets:299   UGGUCUGGCGCACCGGACUGUCCG   322

2.5 Zea mays clone 1215356 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT060603.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **=**||||||||||||*|||||
targets:1543   CCGGUGGCGCACCGGACUGUCCG   1565

2.5 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget
EU947920.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  |||=|||*|||||||||*|||||
targets:392   UGAUGGGGGCACCGGACUGUCCG   414

2.5 Zea mays clone 366338 mRNA sequence NA coding protein psRNATarget
BT069074.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***|*||=|||||||||||||||
targets:760   GCCCUGGUGCACCGGACAGUCCG   782

2.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
EU940831.1
ncRNA:23   AC-UGCC-CGCGUGGCCUGUCAGGC   1
  ||-||||-||*||||||||||||||
targets:291   UGUACGGUGCACACCGGACAGUCCG   315

3.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
BT086229.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *|*|*||=|||||||||||||||
targets:827   AGCCUGGUGCACCGGACAGUCCG   849

2.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
EZ065990.1
ncRNA:19   CCCGCGUGGCCUGUCAGGC   1
  *||||||||||||||||||
targets:1   UGGCGCACCGGACAGUCCG   19

1.0 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
EU950973.1
ncRNA:23   ACUGCC-CGCGUGGCCUGUCAGGC   1
  ***|||-|=|||||||||||||||
targets:179   GUCCGGUGUGCACCGGACAGUCCG   202

3.0 Zea mays clone 677173 mRNA sequence NA coding protein psRNATarget
JB169871.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  |**|*||=|||||||||||||||
targets:90   UCCCUGGUGCACCGGACAGUCCG   112

2.0 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
JB169871.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **||*|||*||||||||||||||
targets:9   CCACUGGCACACCGGACAGUCCG   31

2.0 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
HI409410.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  |**|*||=|||||||||||||||
targets:90   UCCCUGGUGCACCGGACAGUCCG   112

2.0 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
HI409410.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **||*|||*||||||||||||||
targets:9   CCACUGGCACACCGGACAGUCCG   31

2.0 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
LQ241540.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  |**|*||=|||||||||||||||
targets:90   UCCCUGGUGCACCGGACAGUCCG   112

2.0 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
LQ241540.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  **||*|||*||||||||||||||
targets:9   CCACUGGCACACCGGACAGUCCG   31

2.0 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
EU948808.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  ||=-|*||||||||||||*|||||
targets:292   UGGUCUGGCGCACCGGACUGUCCG   315

2.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
XM_020550873.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  |*==||||*||||||=|||||||
targets:1128   UCGUGGGCUCACCGGGCAGUCCG   1150

2.5 PREDICTED: Zea mays nascent polypeptide-associated complex subunit alpha, muscle-specific form-like (LOC103652142), mRNA NA coding protein psRNATarget
BT066461.2
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ||=**||||||||*|||||||||
targets:482   UGGGUGGCGCACCAGACAGUCCG   504

2.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
NM_001176839.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  ||=-|*||||||||||||*|||||
targets:1268   UGGUCUGGCGCACCGGACUGUCCG   1291

2.5 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
BT069667.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  ||=-|*||||||||||||*|||||
targets:1268   UGGUCUGGCGCACCGGACUGUCCG   1291

2.5 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
EZ091678.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  ||=-|*||||||||||||*|||||
targets:8   UGGUCUGGCGCACCGGACUGUCCG   31

2.5 TSA: Zea mays contig27327, mRNA sequence NA coding protein psRNATarget
EZ088459.1
ncRNA:23   ACU-GCCCGCGUGGCCUGUCAGGC   1
  ||=-|*||||||||||||*|||||
targets:80   UGGUCUGGCGCACCGGACUGUCCG   103

2.5 TSA: Zea mays contig24105, mRNA sequence NA coding protein psRNATarget
BT019242.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *||*|||*|||||||||*|||||
targets:833   AGAAGGGGGCACCGGACUGUCCG   855

2.5 Zea mays clone Contig915.F mRNA sequence NA coding protein psRNATarget
JB169821.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:11   GUCUGGGUGCACCGGACUGUCCG   33

2.5 Sequence 7485 from Patent EP2559767 NA coding protein psRNATarget
JB170392.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:11   GUCUGGGUGCACCGGACUGUCCG   33

2.5 Sequence 8056 from Patent EP2559767 NA coding protein psRNATarget
HI409931.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:11   GUCUGGGUGCACCGGACUGUCCG   33

2.5 Sequence 8056 from Patent EP2074227 NA coding protein psRNATarget
HI409360.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:11   GUCUGGGUGCACCGGACUGUCCG   33

2.5 Sequence 7485 from Patent EP2074227 NA coding protein psRNATarget
LQ241490.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:11   GUCUGGGUGCACCGGACUGUCCG   33

2.5 Sequence 7485 from Patent EP2985353 NA coding protein psRNATarget
LQ242061.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:11   GUCUGGGUGCACCGGACUGUCCG   33

2.5 Sequence 8056 from Patent EP2985353 NA coding protein psRNATarget
BT037301.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:855   GUCUGGGUGCACCGGACUGUCCG   877

2.5 Zea mays full-length cDNA clone ZM_BFb0161O03 mRNA, complete cds NA coding protein psRNATarget
NM_001309905.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:1027   GUCUGGGUGCACCGGACUGUCCG   1049

2.5 Zea mays uncharacterized LOC100216760 (LOC100216760), mRNA NA coding protein psRNATarget
NM_001175099.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:1286   GUCUGGGUGCACCGGACUGUCCG   1308

2.5 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
NM_001175099.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *||*|||*|||||||||*|||||
targets:1504   AGAAGGGGGCACCGGACUGUCCG   1526

2.5 Zea mays uncharacterized LOC100382353 (LOC100382353), mRNA NA coding protein psRNATarget
BT064005.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:1286   GUCUGGGUGCACCGGACUGUCCG   1308

2.5 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
BT064005.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *||*|||*|||||||||*|||||
targets:1504   AGAAGGGGGCACCGGACUGUCCG   1526

2.5 Zea mays full-length cDNA clone ZM_BFc0130B19 mRNA, complete cds NA coding protein psRNATarget
NM_001152486.1
ncRNA:23   ACU---GCCCGCGUGGCCUGUCAGGC   1
  |||---=|||*|||||||||*|||||
targets:1127   UGAGUCUGGGAGCACCGGACUGUCCG   1152

2.5 Zea mays hypothetical protein (LOC100279484), mRNA NA coding protein psRNATarget
BT054327.1
ncRNA:23   ACU---GCCCGCGUGGCCUGUCAGGC   1
  |||---=|||*|||||||||*|||||
targets:1127   UGAGUCUGGGAGCACCGGACUGUCCG   1152

2.5 Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds NA coding protein psRNATarget
EU960150.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  ***=|||=|||||||||*|||||
targets:1197   GUCUGGGUGCACCGGACUGUCCG   1219

2.5 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU960150.1
ncRNA:23   ACUGCCCGCGUGGCCUGUCAGGC   1
  *||*|||*|||||||||*|||||
targets:1415   AGAAGGGGGCACCGGACUGUCCG   1437

2.5 Zea mays clone 222169 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU940845.1
ncRNA:23   ACUGC-CCGCGUGGCCUGUCAGGC   1
  ***||-|||*||||||||||||||
targets:1377   GCCCGUGGCACACCGGACAGUCCG   1400

3.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget