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BaseInfo

ncRNA ID novel_zma_miR84
Species Zea mays
Class miRNA
Genome position Chr3:228564685-228564737 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR1997865;SRR5451005
Length 24
Mature sequence(if miRNA) 30 - GGUGGAUGAUGAGCUAGACGACGU - 53
Stem-loop(if miRNA) --  U G  G UG G   -       U
  GG G AU A  A CUA GACGACG G
  || | || |  | ||| ||||||| A
  CC C UA U  U GAU CUGCUGC U
GA  - G  G GU G   A       U
Stem-loop sequence GGUGGAUGAUGAGCUAGACGACGUGAUUCGUCGUCAUAGGUUGUGAUGCCCAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543898.1
ncRNA:24   UGCAGCAGAUCGAGUAGUAGGUGG   1
  |||*||||*|||||||||||||||
targets:344   ACGCCGUCCAGCUCAUCAUCCACC   367

1.0 PREDICTED: Zea mays oral cancer-overexpressed protein 1 homolog (LOC103639445), transcript variant X4, mRNA NA coding protein psRNATarget
EU952646.1
ncRNA:24   UGCAGCAGAUCGAGUAGUAGGUGG   1
  |||*||||*||||||||=||||||
targets:591   ACGCCGUCCAGCUCAUCGUCCACC   614

2.5 Zea mays clone 1285286 mRNA sequence NA coding protein psRNATarget
XM_020551972.1
ncRNA:24   UGCAGCAGAUCGAGUAGUAGGUGG   1
  |||*=|||*||||||||=||||||
targets:1222   ACGCUGUCGAGCUCAUCGUCCACC   1245

2.5 PREDICTED: Zea mays uncharacterized LOC109945661 (LOC109945661), mRNA NA coding protein psRNATarget