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BaseInfo

ncRNA ID	novel_zma_miR82
Species	Zea mays
Class	miRNA
Genome position	Chr3:21870225-21870324 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - CAAUUCAUGUGGAUUGAGUGGGAU - 24
Stem-loop(if miRNA)	--    U           AG       ----------------   UGAGUUUUAAUC   CAAU CAUGUGGAUUG  UGGGAUU                GGA            C   |||| |||||||||||  |||||||                |||   GUUA GUGUACCUAAC  ACUCUAA                UUC            C GG    U           CU       CAUUUUUUAACUCUUC   AAACUGAACAAA
Stem-loop sequence	CAAUUCAUGUGGAUUGAGUGGGAUUGGAUGAGUUUUAAUCCCAAACAAGUCAAACUUCUUCUCAAUUUUUUACAAUCUCAUCCAAUCCAUGUGUAUUGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ064016.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||||||| targets:126   AUCCCACUCAAUCCACAUGAAUUG   149 Target Full Sequence	0.0	TSA: Zea mays contig65139, mRNA sequence	NA	coding protein	psRNATarget
XM_020545430.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:5810   AUCCCACUCAAUCCACAUGGAUUG   5833 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109942872 (LOC109942872), mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1235   AUCCCACUCAAUCCACAUGGAUUG   1258 Target Full Sequence	1.5	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1205   AUCCCACUCAAUCCACAUGGAUUG   1228 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1205   AUCCCACUCAAUCCACAUGGAUUG   1228 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1087   AUCCCACUCAAUCCACAUGGAUUG   1110 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001175969.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1964   AUCCCACUCAAUCCACAUGGAUUG   1987 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383311 (LOC100383311), mRNA	NA	coding protein	psRNATarget
BT066874.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1964   AUCCCACUCAAUCCACAUGGAUUG   1987 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0081D21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679547.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:2506   AUCCCACUCAAUCCACAUGGAUUG   2529 Target Full Sequence	1.5	PREDICTED: Zea mays putative methyltransferase PMT15 (LOC101027245), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661718.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:2217   AUCCCACUCAAUCCACAUGGAUUG   2240 Target Full Sequence	1.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1 (LOC103638926), mRNA	NA	coding protein	psRNATarget
EU955633.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1821   AUCCCACUCAAUCCACAUGGAUUG   1844 Target Full Sequence	1.5	Zea mays clone 1540038 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154031.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1821   AUCCCACUCAAUCCACAUGGAUUG   1844 Target Full Sequence	1.5	Zea mays uncharacterized LOC100281112 (LOC100281112), mRNA	NA	coding protein	psRNATarget
BT088232.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1536   AUCCCACUCAAUCCACAUGGAUUG   1559 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086F14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279968.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1536   AUCCCACUCAAUCCACAUGGAUUG   1559 Target Full Sequence	1.5	Zea mays putative methyltransferase PMT15 (LOC101027245), mRNA	NA	coding protein	psRNATarget
BT066987.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1421   AUCCCACUCAAUCCACAUGGAUUG   1444 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0138F03 mRNA, complete cds	NA	coding protein	psRNATarget
BT069115.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:534   AUCCCACUCAAUCCACAUGGAUUG   557 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0186N21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147844.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1130   AUCCCACUCAAUCCACAUGGAUUG   1153 Target Full Sequence	1.5	Zea mays Phytanoyl-CoA dioxygenase (LOC100273407), mRNA	NA	coding protein	psRNATarget
BT041052.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:1130   AUCCCACUCAAUCCACAUGGAUUG   1153 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0169K03 mRNA, complete cds	NA	coding protein	psRNATarget
BT085319.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:182   AUCCCACUCAAUCCACAUGGAUUG   205 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0375P22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552889.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:880   AUCCCACUCAAUCCACAUGGAUUG   903 Target Full Sequence	1.5	PREDICTED: Zea mays pre-mRNA-splicing factor CWC21-like (LOC103654764), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU951448.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:751   AUCCCACUCAAUCCACAUGGAUUG   774 Target Full Sequence	1.5	Zea mays clone 701961 mRNA sequence	NA	coding protein	psRNATarget
EU942673.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:97   AUCCCACUCAAUCCACAUGGAUUG   120 Target Full Sequence	1.5	Zea mays clone 1529344 mRNA sequence	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403094.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1219 from Patent EP2074227	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235224.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1219 from Patent EP2985353	NA	coding protein	psRNATarget
JB163551.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
JB163555.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1219 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235150.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1145 from Patent EP2985353	NA	coding protein	psRNATarget
HI403020.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1145 from Patent EP2074227	NA	coding protein	psRNATarget
JB163481.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:104   AUCCCACUCAAUCCACAUGGAUUG   127 Target Full Sequence	1.5	Sequence 1145 from Patent EP2559767	NA	coding protein	psRNATarget
HI405841.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:95   AUCCCACUCAAUCCACAUGGAUUG   118 Target Full Sequence	1.5	Sequence 3966 from Patent EP2074227	NA	coding protein	psRNATarget
JB166302.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:95   AUCCCACUCAAUCCACAUGGAUUG   118 Target Full Sequence	1.5	Sequence 3966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237971.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:95   AUCCCACUCAAUCCACAUGGAUUG   118 Target Full Sequence	1.5	Sequence 3966 from Patent EP2985353	NA	coding protein	psRNATarget
HI405902.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:86   AUCCCACUCAAUCCACAUGGAUUG   109 Target Full Sequence	1.5	Sequence 4027 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238032.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:86   AUCCCACUCAAUCCACAUGGAUUG   109 Target Full Sequence	1.5	Sequence 4027 from Patent EP2985353	NA	coding protein	psRNATarget
JB166363.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:86   AUCCCACUCAAUCCACAUGGAUUG   109 Target Full Sequence	1.5	Sequence 4027 from Patent EP2559767	NA	coding protein	psRNATarget
HI405889.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:85   AUCCCACUCAAUCCACAUGGAUUG   108 Target Full Sequence	1.5	Sequence 4014 from Patent EP2074227	NA	coding protein	psRNATarget
JB166350.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:85   AUCCCACUCAAUCCACAUGGAUUG   108 Target Full Sequence	1.5	Sequence 4014 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238019.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||||||||||||||=|||| targets:85   AUCCCACUCAAUCCACAUGGAUUG   108 Target Full Sequence	1.5	Sequence 4014 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020542399.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||||||=||||||||||=|||| targets:7266   AUCCCACUUAAUCCACAUGGAUUG   7289 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||||||=||||||||||=|||| targets:7255   AUCCCACUUAAUCCACAUGGAUUG   7278 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||||||=||||||||||=|||| targets:7151   AUCCCACUUAAUCCACAUGGAUUG   7174 Target Full Sequence	2.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020539703.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:66   AUCCCGCUCAAUCCACAUGGAUUG   89 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940256 (LOC109940256), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:3444   AUCUCACUCAAUCCACAUGGAUUG   3467 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:3413   AUCUCACUCAAUCCACAUGGAUUG   3436 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:3400   AUCUCACUCAAUCCACAUGGAUUG   3423 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541448.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:2910   AUCCCGCUCAAUCCACAUGGAUUG   2933 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541449.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:2806   AUCCCGCUCAAUCCACAUGGAUUG   2829 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103634414 (LOC103634414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:2354   AUCUCACUCAAUCCACAUGGAUUG   2377 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:2294   AUCUCACUCAAUCCACAUGGAUUG   2317 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:2287   AUCUCACUCAAUCCACAUGGAUUG   2310 Target Full Sequence	1.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:2159   AUCUCACUCAAUCCACAUGGAUUG   2182 Target Full Sequence	1.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:2158   AUCUCACUCAAUCCACAUGGAUUG   2181 Target Full Sequence	1.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:2086   AUCUCACUCAAUCCACAUGGAUUG   2109 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664275.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:2146   AUCCCGCUCAAUCCACAUGGAUUG   2169 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018903.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:2035   AUCCCGCUCAAUCCACAUGGAUUG   2058 Target Full Sequence	2.5	Zea mays clone EL01T0208C03.d mRNA sequence	NA	coding protein	psRNATarget
XM_008664276.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:2053   AUCCCGCUCAAUCCACAUGGAUUG   2076 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103640803), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645867.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:1958   AUCCCGCUCAAUCCACAUGGAUUG   1981 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553538.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:1892   AUCCCGCUCAAUCCACAUGGAUUG   1915 Target Full Sequence	2.5	PREDICTED: Zea mays Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (LOC100383610), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645912.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:1625   AUCCCGCUCAAUCCACAUGGAUUG   1648 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383981 (LOC100383981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:1449   AUCUCACUCAAUCCACAUGGAUUG   1472 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:1449   AUCUCACUCAAUCCACAUGGAUUG   1472 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT068797.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:1134   AUCCCGCUCAAUCCACAUGGAUUG   1157 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0382L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176594.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||=|||||||||||||=|||| targets:1134   AUCCCGCUCAAUCCACAUGGAUUG   1157 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383981 (LOC100383981), mRNA	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:252   AUCUCACUCAAUCCACAUGGAUUG   275 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:461   AUCUCACUCAAUCCACAUGGAUUG   484 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||||||=||||||||||=|||| targets:104   AUCCCACUUAAUCCACAUGGAUUG   127 Target Full Sequence	2.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=||=||||||||||||||||| targets:104   AUCUCAUUCAAUCCACAUGAAUUG   127 Target Full Sequence	1.0	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=||=||||||||||||||||| targets:104   AUCUCAUUCAAUCCACAUGAAUUG   127 Target Full Sequence	1.0	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=||=||||||||||||||||| targets:104   AUCUCAUUCAAUCCACAUGAAUUG   127 Target Full Sequence	1.0	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||||||=||||||||||=|||| targets:104   AUCCCACUUAAUCCACAUGGAUUG   127 Target Full Sequence	2.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||||||=||||||||||=|||| targets:104   AUCCCACUUAAUCCACAUGGAUUG   127 Target Full Sequence	2.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:97   AUCUCACUCAAUCCACAUGGAUUG   120 Target Full Sequence	1.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:97   AUCUCACUCAAUCCACAUGGAUUG   120 Target Full Sequence	1.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:97   AUCUCACUCAAUCCACAUGGAUUG   120 Target Full Sequence	1.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:93   AUCUCACUCAAUCCACAUGGAUUG   116 Target Full Sequence	1.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:93   AUCUCACUCAAUCCACAUGGAUUG   116 Target Full Sequence	1.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:93   AUCUCACUCAAUCCACAUGGAUUG   116 Target Full Sequence	1.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:85   AUCUCACUCAAUCCACAUGGAUUG   108 Target Full Sequence	1.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:85   AUCUCACUCAAUCCACAUGGAUUG   108 Target Full Sequence	1.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:85   AUCUCACUCAAUCCACAUGGAUUG   108 Target Full Sequence	1.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||||||||||||||=|||| targets:22   AUCUCACUCAAUCCACAUGGAUUG   45 Target Full Sequence	1.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
AY103719.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||==|||||||||||||=|||| targets:884   AUCCUGCUCAAUCCACAUGGAUUG   907 Target Full Sequence	2.5	Zea mays PCO137008 mRNA sequence	NA	coding protein	psRNATarget
HI405903.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||==|||||||||||||=|||| targets:85   AUCCUGCUCAAUCCACAUGGAUUG   108 Target Full Sequence	2.5	Sequence 4028 from Patent EP2074227	NA	coding protein	psRNATarget
JB166364.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||==|||||||||||||=|||| targets:85   AUCCUGCUCAAUCCACAUGGAUUG   108 Target Full Sequence	2.5	Sequence 4028 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238033.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||||==|||||||||||||=|||| targets:85   AUCCUGCUCAAUCCACAUGGAUUG   108 Target Full Sequence	2.5	Sequence 4028 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*|||||||||||=|||| targets:1833   AUCCCACCCAAUCCACAUGGAUUG   1856 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*|||||||||||=|||| targets:1817   AUCCCACCCAAUCCACAUGGAUUG   1840 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT066441.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*|||||||||||=|||| targets:1533   AUCCCACCCAAUCCACAUGGAUUG   1556 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165B04 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||*|||||||||=|||||||| targets:467   AUCCCUCUCAAUCCAUAUGAAUUG   490 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
HI409272.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*|||||||||||=|||| targets:80   AUCCCACCCAAUCCACAUGGAUUG   103 Target Full Sequence	2.5	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
JB169733.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*|||||||||||=|||| targets:80   AUCCCACCCAAUCCACAUGGAUUG   103 Target Full Sequence	2.5	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*|||||||||||=|||| targets:80   AUCCCACCCAAUCCACAUGGAUUG   103 Target Full Sequence	2.5	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001138165.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||*|||||||||||=|||| targets:1222   AUCUCACCCAAUCCACAUGGAUUG   1245 Target Full Sequence	2.5	Zea mays B3 domain-containing protein (LOC100192994), mRNA	NA	coding protein	psRNATarget
BT035134.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||*|||||||||||=|||| targets:1222   AUCUCACCCAAUCCACAUGGAUUG   1245 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647186.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||*|||||||||||=|||| targets:1060   AUCUCACCCAAUCCACAUGGAUUG   1083 Target Full Sequence	2.5	PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087300.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||=|||*|||||||||||=|||| targets:1027   AUCUCACCCAAUCCACAUGGAUUG   1050 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds	NA	coding protein	psRNATarget
EU952677.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||*||||||||||||||||=|||* targets:991   AUACCACUCAAUCCACAUGGAUUA   1014 Target Full Sequence	2.5	Zea mays clone 1286167 mitochondrial glycoprotein mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
BT042439.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||*||||||||||||||||=|||* targets:969   AUACCACUCAAUCCACAUGGAUUA   992 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234C02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066125.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||*||||||||||||||||=|||* targets:1078   AUACCACUCAAUCCACAUGGAUUA   1101 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0377H04 mRNA, complete cds	NA	coding protein	psRNATarget
HI409215.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*=||||||||||||||* targets:80   AUCCCACCUAAUCCACAUGAAUUA   103 Target Full Sequence	3.0	Sequence 7340 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241345.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*=||||||||||||||* targets:80   AUCCCACCUAAUCCACAUGAAUUA   103 Target Full Sequence	3.0	Sequence 7340 from Patent EP2985353	NA	coding protein	psRNATarget
JB169676.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   |||||||*=||||||||||||||* targets:80   AUCCCACCUAAUCCACAUGAAUUA   103 Target Full Sequence	3.0	Sequence 7340 from Patent EP2559767	NA	coding protein	psRNATarget
BT018765.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   =|=|*=|||||||||=|||||||| targets:1172   GUUCAGCUCAAUCCAUAUGAAUUG   1195 Target Full Sequence	2.5	Zea mays clone EL01N0524E08.d mRNA sequence	NA	coding protein	psRNATarget
BT042079.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   =|=|*=|||||||||=|||||||| targets:1151   GUUCAGCUCAAUCCAUAUGAAUUG   1174 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0126H24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148335.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   =|=|*=|||||||||=|||||||| targets:1151   GUUCAGCUCAAUCCAUAUGAAUUG   1174 Target Full Sequence	2.5	Zea mays Methyltransferase family protein (LOC100273944), mRNA	NA	coding protein	psRNATarget
EU967897.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   =|=|*=|||||||||=|||||||| targets:1190   GUUCAGCUCAAUCCAUAUGAAUUG   1213 Target Full Sequence	2.5	Zea mays clone 306881 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546921.1	ncRNA:24   UAGGGUGAGUUAGGUGUACUUAAC   1   ||==|||*=||||||||||||||* targets:2801   AUUUCACCUAAUCCACAUGAAUUU   2824 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109943544 (LOC109943544), mRNA	NA	coding protein	psRNATarget