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BaseInfo

ncRNA ID	novel_zma_miR76
Species	Zea mays
Class	miRNA
Genome position	Chr3:209426449-209426499 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089703;SRR2089708
Length	24
Mature sequence(if miRNA)	28 - GGAUUGAGGGGGAUUGAGGAGGUU - 51
Stem-loop(if miRNA)	--   G        UA   -      A   CCU UUCGGUUC  CCC CAAUCC U   ||| ||||||||  ||| ||||||   GGA GAGUUAGG  GGG GUUAGG A UU   G        --   A      U
Stem-loop sequence	CCUGUUCGGUUCUACCCCAAUCCAUAUGGAUUGAGGGGGAUUGAGGAGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409817.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*||||||||||||||||||| targets:73   AACCACCUCAAUCCCCCUCAAUCC   96 Target Full Sequence	0.0	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*||||||||||||||||||| targets:73   AACCACCUCAAUCCCCCUCAAUCC   96 Target Full Sequence	0.0	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*||||||||||||||||||| targets:73   AACCACCUCAAUCCCCCUCAAUCC   96 Target Full Sequence	0.0	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*||||||||||||||||||| targets:1962   AACCCCCUCAAUCCCCCUCAAUCC   1985 Target Full Sequence	0.0	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*|||||||||=||||||||| targets:74   AACCCCCUCAAUCCUCCUCAAUCC   97 Target Full Sequence	1.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*|||||||||=||||||||| targets:74   AACCCCCUCAAUCCUCCUCAAUCC   97 Target Full Sequence	1.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*|||||||||=||||||||| targets:74   AACCCCCUCAAUCCUCCUCAAUCC   97 Target Full Sequence	1.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*|=||||||||||||||||| targets:842   AACCCCUUCAAUCCCCCUCAAUCC   865 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||*||||||||||=|||||||| targets:1066   AACCCCCUCAAUCCCUCUCAAUCC   1089 Target Full Sequence	1.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||-||||=|||||||||||||| targets:24   AACC-CCUCGAUCCCCCUCAAUCC   46 Target Full Sequence	1.0	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   UUGGAGGAGUUAGGGGGAGUUAGG   1   ||||**|||||||||||||||||| targets:599   AACCCACUCAAUCCCCCUCAAUCC   622 Target Full Sequence	1.0	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   UUGGAGGAG-UUAGGGGGAGUUAGG   1   ||=|*||||-||||||||||||||| targets:3271   AAUCCCCUCCAAUCCCCCUCAAUCC   3295 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   UUGGAGGAG-UUAGGGGGAGUUAGG   1   ||=|*||||-||||||||||||||| targets:1592   AAUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   UUGGAGGAG-UUAGGGGGAGUUAGG   1   ||=|*||||-||||||||||||||| targets:1592   AAUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   UUGGAGGAG-UUAGGGGGAGUUAGG   1   ||=|*|=||-||||||||||||||| targets:31   AAUCCCUUCCAAUCCCCCUCAAUCC   55 Target Full Sequence	3.0	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   UU-GGAGGAGUUAGGGGGAGUUAGG   1   ||-||*||||||||*|||||||||| targets:1600   AAUCCCCCUCAAUCACCCUCAAUCC   1624 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   UU-GGAGGAGUUAGGGGGAGUUAGG   1   ||-||*||||||||*|||||||||| targets:1600   AAUCCCCCUCAAUCACCCUCAAUCC   1624 Target Full Sequence	1.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   UUGGAGGAG-UUAGGGGGAGUUAGG   1   ||=|**|||-||||||||||||||| targets:3919   AAUCCACUCCAAUCCCCCUCAAUCC   3943 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget