Search result

BaseInfo

ncRNA ID	novel_zma_miR74
Species	Zea mays
Class	miRNA
Genome position	Chr3:196948460-196948570 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866;SRR2089698;SRR2089699;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AGAGACGCAAGAAGAUGUAGAGAA - 24
Stem-loop(if miRNA)	--     CG  AG    U  -    AA    UCU    --UC   UAAG A  ACA A G   AGAGA  CA  AAGA GU AGAG  CCCG   CCCU    CCA    C CG   G G A   |||||  ||  |||| || ||||  ||||   ||||    |||    | ||   | |   UCUCU  GU  UUCU CG UCUC  GGGU   GGGA    GGU    G GC   C C A UG     -A  CU    C  G    -C    --U    UAUA   CACA A  --A A A
Stem-loop sequence	AGAGACGCAAGAAGAUGUAGAGAACCCGUCUCCCUUCCCAUAAGCACGACAGAGGAAACACACGAGACACUGGAUAUAGGGUUGGGCCUCUGGCCUCUUUCUGAUCUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001152660.1	ncRNA:24   AAGAGAUGUAGAAGAACGCAGAGA   1   |||||||||||||||||||*|||| targets:620   UUCUCUACAUCUUCUUGCGCCUCU   643 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279696 (LOC100279696), mRNA	NA	coding protein	psRNATarget
BT054719.2	ncRNA:24   AAGAGAUGUAGAAGAACGCAGAGA   1   |||||||||||||||||||*|||| targets:620   UUCUCUACAUCUUCUUGCGCCUCU   643 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0117L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU946036.1	ncRNA:24   AAGAGAUGUAGAAGAACGCAGAGA   1   ||=||||||||||||||||*|||| targets:72   UUUUCUACAUCUUCUUGCGCCUCU   95 Target Full Sequence	1.5	Zea mays clone 294171 mRNA sequence	NA	coding protein	psRNATarget
EU949311.1	ncRNA:24   AAGAGAUGUAGAAGAACGCAGAGA   1   ||=||||||||||||||||*|||| targets:71   UUUUCUACAUCUUCUUGCGCCUCU   94 Target Full Sequence	1.5	Zea mays clone 400967 mRNA sequence	NA	coding protein	psRNATarget
EZ111517.1	ncRNA:24   AAGAGAUGUAGAAGAACGCAGAGA   1   |*|||||||*|||||||||*|||| targets:71   UACUCUACAGCUUCUUGCGCCUCU   94 Target Full Sequence	2.5	TSA: Zea mays contig47178, mRNA sequence	NA	coding protein	psRNATarget
EU968673.1	ncRNA:24   AAGAGAUGUAGAAGAACGCAGAGA   1   |*|||||||*|||||||||*|||| targets:22   UACUCUACAACUUCUUGCGCCUCU   45 Target Full Sequence	2.5	Zea mays clone 323268 mRNA sequence	NA	coding protein	psRNATarget
BT087898.2	ncRNA:24   AAGAGAUGUAGAAGAACGCAGAGA   1   |*|||||||*|||||||||*|||| targets:522   UACUCUACAGCUUCUUGCGCCUCU   545 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0296N05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548794.1	ncRNA:24   AAGA-GAUGUAGAAGAACGCAGAGA   1   *|||-|||||*|||||||||*|||| targets:197   GUCUUCUACAGCUUCUUGCGCCUCU   221 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103639870 (LOC103639870), mRNA	NA	coding protein	psRNATarget