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BaseInfo

ncRNA ID novel_zma_miR72
Species Zea mays
Class miRNA
Genome position Chr3:169458881-169458975 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR5451003;SRR5451004;SRR5451006;SRR2089698;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 72 - AAACUCUGAGUGGAGCAGCUCUGC - 95
Stem-loop(if miRNA) --             C     A  -----      G     --   AU   
  AGAGUUGCUCCAC UAGAG UU     UAGGGC UGUUU  GGU  GGCU
  ||||||||||||| ||||| ||     |||||| |||||  |||  |||C
  UCUCGACGAGGUG GUCUC AA     AUCUCG ACGAG  CCA  UCGU
CG             A     A  ACUUC      -     AC   CC   
Stem-loop sequence AGAGUUGCUCCACCUAGAGAUUUAGGGCGUGUUUGGUAUGGCUCUGCUCCACCCAGAGCAGCUCUACUUCAAAACUCUGAGUGGAGCAGCUCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT084823.2
ncRNA:24   CGUCUCGACGAGGUGAGUCUCAAA   1
  |||||||||||||||*||||||||
targets:530   GCAGAGCUGCUCCACCCAGAGUUU   553

1.5 Zea mays full-length cDNA clone ZM_BFb0187L14 mRNA, complete cds NA coding protein psRNATarget