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BaseInfo

ncRNA ID	novel_zma_miR71
Species	Zea mays
Class	miRNA
Genome position	Chr3:14066395-14066456 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089713;SRR2089714;SRR2089715;SRR2287161;SRR2287163;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AGGAUUGGAGGGGAUUGAGGAGGA - 24
Stem-loop(if miRNA)	--                    A      UA   AGGAUUGGAGGGGAUUGAGG GGAAAU  G   |||||||||||||||||||| ||||||   UCCUAACCUCCCCUAACUCC CCUUUA  U CC                    C      UU
Stem-loop sequence	AGGAUUGGAGGGGAUUGAGGAGGAAAUUAGUUUAUUUCCCCCUCAAUCCCCUCCAAUCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163816.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |=|||||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |=|||||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |=|||||||||||||||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	0.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403018.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   ||||=|||||||||||||=||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	1.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   ||||=|||||||||||||=||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	1.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
JB163479.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   ||||=|||||||||||||=||||| targets:54   UCCUUCUCAAUCCCCUCCGAUCCU   77 Target Full Sequence	1.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||||||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	0.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGAG-GAGUUAGGGGAGGUUAGGA   1   |=|||-||||||||||||||||||| targets:1462   UUCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |=|*|||||||||||||||||||| targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	0.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |=|*|||||||||||||||||||| targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	0.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*||||||||||||||=||||| targets:2150   UCCCCCUCAAUCCCCUCCGAUCCU   2173 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||=||||||||=||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||=||||||||=||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||=||||||||=||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
JB163751.1	ncRNA:24   AGGAG-GAGUUAGGGGAGGUUAGGA   1   |=|||-||||||||||||||||||* targets:69   UUCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	3.0	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
HI403290.1	ncRNA:24   AGGAG-GAGUUAGGGGAGGUUAGGA   1   |=|||-||||||||||||||||||* targets:69   UUCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	3.0	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:24   AGGAG-GAGUUAGGGGAGGUUAGGA   1   |=|||-||||||||||||||||||* targets:69   UUCUCACUCAAUCCCCUCCAAUCCC   93 Target Full Sequence	3.0	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||=||||||||=||||||| targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||=||||||||=||||||| targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||=||||||||=||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||=||||||||=||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |=|-|||=|||||||||||||||| targets:78   UUC-CCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||||||=|||||* targets:1798   UCCCCCUCAAUCCCCUCUAAUCCC   1821 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|||||||||=|||||||||* targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*||||||||||||||=||||* targets:3175   UCCCCCUCAAUCCCCUCCGAUCCC   3198 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   ||=*||||||||||||=||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   ||=*||||||||||||=||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   ||=*||||||||||||=||||||* targets:84   UCUCCCUCAAUCCCCUUCAAUCCA   107 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:24   AGGA----GGAGUUAGGGGAGGUUAGGA   1   |=||----|||||||||||||=|||||* targets:1063   UUCUAGCCCCUCAAUCCCCUCUAAUCCC   1090 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666284.2	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|=||||||||*||||||||| targets:3281   UCCACUUCAAUCCCAUCCAAUCCU   3304 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666283.2	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   |||*|=||||||||*||||||||| targets:3364   UCCACUUCAAUCCCAUCCAAUCCU   3387 Target Full Sequence	2.5	PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:24   AGGAGGAGUUAGGGGAGGUUAGGA   1   *||*|||||||||||||||=|||* targets:10   GCCCCCUCAAUCCCCUCCAGUCCC   33 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget