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BaseInfo

ncRNA ID novel_zma_miR70
Species Zea mays
Class miRNA
Genome position Chr3:153032669-153032760 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089713;SRR2089715;SRR4237221;SRR4237223;SRR4237224;SRR4237225;SRR5099742;SRR5100248;SRR5100255;SRR5105959;SRR5105961
Length 21
Mature sequence(if miRNA) 72 - UUCUGGAGGGGAUUUGAGUUU - 92
Stem-loop(if miRNA) --                 U        U          AG   GC
  ACUCAAAUCCCUUCCGG AUUGGAGG GAUUGAGGGG  AAU  A
  ||||||||||||||||| |||||||| ||||||||||  |||
  UGAGUUUAGGGGAGGUC UAAUCUCC CUAACUCCUU  UUA  A
UU                 U        U          CU   AU
Stem-loop sequence ACUCAAAUCCCUUCCGGUAUUGGAGGUGAUUGAGGGGAGAAUGCAAUAAUUUCUUCCUCAAUCUCCUCUAAUUCUGGAGGGGAUUUGAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545649.1
ncRNA:21   UUUGAGUUUAGGGGAGGUCUU   1
  |||||||||||||||=|||||
targets:662   AAACUCAAAUCCCCUUCAGAA   682

1.5 PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA NA coding protein psRNATarget