ncRNA ID | osa-miR166c-5p |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr3:3487788-3487912 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 12 - GGAAUGUUGUCUGGUCCGAG - 31 |
Stem-loop(if miRNA) |
G        -----        UU                AA    G   -G   UGGCGGAUU  GCAGUUGA     GGGGAAUG  GUCUGGUCCGAGACCU  CACC GGC  GAA         C  ||||||||     ||||||||  ||||||||||||||||  |||| |||  |||         A  UGUCAACU     CCCCUUAC  CGGACCAGGCUUUGGG  GUGG UCG  CGA         G U        CAACC        UU                GG    A   AA   AUCGACGUC |
Stem-loop sequence | GGCAGUUGAGGGGAAUGUUGUCUGGUCCGAGACCUAACACCGGGCGGAAUGGCGGAUUCAGCUGCAGCUAAGCAAGCUAGGUGGGGGGUUUCGGACCAGGCUUCAUUCCCCCCAACUCAACUGUU |
1 | PMID:12101121
"MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002). |
2 | PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011). |