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BaseInfo

ncRNA ID osa-miR166c-5p
Species Oryza sativa
Class miRNA
Genome position Chr3:3487788-3487912 [+]
Reference genome MSU7
Source miRBase
Length 20
Mature sequence(if miRNA) 12 - GGAAUGUUGUCUGGUCCGAG - 31
Stem-loop(if miRNA) G        -----        UU                AA    G   -G   UGGCGGAUU
 GCAGUUGA     GGGGAAUG  GUCUGGUCCGAGACCU  CACC GGC  GAA         C
 ||||||||     ||||||||  ||||||||||||||||  |||| |||  |||         A
 UGUCAACU     CCCCUUAC  CGGACCAGGCUUUGGG  GUGG UCG  CGA         G
U        CAACC        UU                GG    A   AA   AUCGACGUC
Stem-loop sequence GGCAGUUGAGGGGAAUGUUGUCUGGUCCGAGACCUAACACCGGGCGGAAUGGCGGAUUCAGCUGCAGCUAAGCAAGCUAGGUGGGGGGUUUCGGACCAGGCUUCAUUCCCCCCAACUCAACUGUU

Reference

1 PMID:12101121
"MicroRNAs in plants";
Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP;
Genes Dev. 16:1616-1626(2002).
2 PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors";
Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y;
PLoS Pathog. 7:e1002176(2011).