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BaseInfo

ncRNA ID	novel_zma_miR66
Species	Zea mays
Class	miRNA
Genome position	Chr10:24840081-24840212 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	1 - AGGGCUGUUUGGUUUGUGGCUAAA - 24
Stem-loop(if miRNA)	--A    -           -       ACG GCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAA    GGGC UGUUUGGUUUG UGGCUAA   U                                    G    |||| ||||||||||| |||||||   |    CCCG ACAAACCAAAC ACUGAUU   C                                    A AAC    G           U       GAA GGGGUGAAACGGUGUGAAAAUGACGGAUUCCAAUCA
Stem-loop sequence	AGGGCUGUUUGGUUUGUGGCUAAACGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGGCAGUAAAAGUGUGGCAAAGUGGGGCAAGUUAGUCAUCAAACCAAACAGGCCCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001346844.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1   ||||||||||||||||||||-|||| targets:1584   UUUAGCCACAAACCAAACAGGCCCU   1608 Target Full Sequence	3.0	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   AAAUCGGUGUUUGGUUUGU-CGGGA   1   |||||||||||||||||||-||||| targets:886   UUUAGCCACAAACCAAACAUGCCCU   910 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ110937.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   |||||||||=|||||||||||||* targets:139   UUUAGCCACGAACCAAACAGCCCC   162 Target Full Sequence	2.0	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
BT033837.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   ||||||=||||||||||||||||* targets:1018   UUUAGCUACAAACCAAACAGCCCC   1041 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   |||||||||=|||||||||||||* targets:84   UUUAGCCACGAACCAAACAGCCCC   107 Target Full Sequence	2.0	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
NM_001137099.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   ||||||=||||||||||||||||* targets:1506   UUUAGCUACAAACCAAACAGCCCC   1529 Target Full Sequence	2.0	Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA	NA	coding protein	psRNATarget
AY109437.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   ||||||=||||||||||||||||* targets:1516   UUUAGCUACAAACCAAACAGCCCC   1539 Target Full Sequence	2.0	Zea mays CL903_-1 mRNA sequence	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   |||||||||=|||||||||||||* targets:797   UUUAGCCACGAACCAAACAGCCCC   820 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   |||||||||=|||||||||||||* targets:797   UUUAGCCACGAACCAAACAGCCCC   820 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   |||||||||=|||||||||||||* targets:797   UUUAGCCACGAACCAAACAGCCCC   820 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   |||||||||=|||||||||||||* targets:2762   UUUAGCCACGAACCAAACAGCCCC   2785 Target Full Sequence	2.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   ||||||||||||||||||||*||| targets:942   UUUAGCCACAAACCAAACAGGCCU   965 Target Full Sequence	1.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   ||||||||||||||||||||*||| targets:1426   UUUAGCCACAAACCAAACAGGCCU   1449 Target Full Sequence	1.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1   *|||||||||||||||||||-|||| targets:994   AUUAGCCACAAACCAAACAGGCCCU   1018 Target Full Sequence	3.0	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   AAAUCGGUGUUUGGUUUGU-CGGGA   1   *||||||||||||||||||-||||| targets:2661   GUUAGCCACAAACCAAACAAGCCCU   2685 Target Full Sequence	3.0	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
BT083952.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   |||||||||*|||||||||||||* targets:1571   UUUAGCCACCAACCAAACAGCCCC   1594 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds	NA	coding protein	psRNATarget
EU955574.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1   ||||*|||||||||||||||-|||| targets:214   UUUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	3.0	Zea mays clone 1537438 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149469.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1   ||||*|||||||||||||||-|||| targets:214   UUUAACCACAAACCAAACAGGCCCU   238 Target Full Sequence	3.0	Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||||||=||||||||||*||| targets:103   GUUAGCCACGAACCAAACAGACCU   126 Target Full Sequence	2.5	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
JB163745.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||||||=||||||||||*||| targets:103   GUUAGCCACGAACCAAACAGACCU   126 Target Full Sequence	2.5	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||||||=||||||||||*||| targets:103   GUUAGCCACGAACCAAACAGACCU   126 Target Full Sequence	2.5	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||||||=||||||||||*||| targets:106   GUUAGCCACGAACCAAACAGGCCU   129 Target Full Sequence	2.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||||||=||||||||||*||| targets:106   GUUAGCCACGAACCAAACAGGCCU   129 Target Full Sequence	2.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||||||=||||||||||*||| targets:106   GUUAGCCACGAACCAAACAGGCCU   129 Target Full Sequence	2.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||||||=||||||||||*||| targets:1067   GUUAGCCACGAACCAAACAGGCCU   1090 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
AY104775.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||*|*|||||||||||||||| targets:648   AUUAGGCUCAAACCAAACAGCCCU   671 Target Full Sequence	2.0	Zea mays PCO061308 mRNA sequence	NA	coding protein	psRNATarget
XM_008649194.2	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||*|*|||||||||||||||| targets:1114   AUUAGGCUCAAACCAAACAGCCCU   1137 Target Full Sequence	2.0	PREDICTED: Zea mays D-aminoacyl-tRNA deacylase (AY104775), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT035068.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||*|*|||||||||||||||| targets:1254   AUUAGGCUCAAACCAAACAGCCCU   1277 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0035J23 mRNA, complete cds	NA	coding protein	psRNATarget
BT036147.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||*|*|||||||||||||||| targets:1255   AUUAGGCUCAAACCAAACAGCCCU   1278 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0098I08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138873.1	ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1   *||||*|*|||||||||||||||| targets:1255   AUUAGGCUCAAACCAAACAGCCCU   1278 Target Full Sequence	2.0	Zea mays D-aminoacyl-tRNA deacylase (AY104775), mRNA	NA	coding protein	psRNATarget