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BaseInfo

ncRNA ID novel_zma_miR65
Species Zea mays
Class miRNA
Genome position Chr3:134418018-134418148 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2287164;SRR2287165;SRR5451003
Length 24
Mature sequence(if miRNA) 1 - AGGGCUGUUUGGUUUGUGGCUAAA - 24
Stem-loop(if miRNA) --A   -            -  G    AUG              -------------          CG   G
   GGG CUGUUUGGUUUG UG CUAA   UGCCACACUUUGCC             UAAGGUUAGU  UUC A
   ||| |||||||||||| || ||||   ||||||||||||||             ||||||||||  ||| A
   CCC GACAAACCAAAC AC GAUU   ACGGUGUGAAACGG             AUUCCAAUCA  AAG U
AUC   A            U  G    -GA              UUUGAAAAGAUGA          AG   U
Stem-loop sequence AGGGCUGUUUGGUUUGUGGCUAAAUGUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAAGUAGAAAAGUUUGGCAAAGUGUGGCAAGUUAGGCAUCAAACCAAACAGACCCCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001346844.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1
  ||||||||||||||||||||-||||
targets:1584   UUUAGCCACAAACCAAACAGGCCCU   1608

3.0 Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA NA coding protein psRNATarget
XM_020543351.1
ncRNA:24   AAAUCGGUGUUUGGUUUGU-CGGGA   1
  |||||||||||||||||||-|||||
targets:886   UUUAGCCACAAACCAAACAUGCCCU   910

3.0 PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA NA coding protein psRNATarget
EZ110937.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  |||||||||=|||||||||||||*
targets:139   UUUAGCCACGAACCAAACAGCCCC   162

2.0 TSA: Zea mays contig46598, mRNA sequence NA coding protein psRNATarget
BT033837.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  ||||||=||||||||||||||||*
targets:1018   UUUAGCUACAAACCAAACAGCCCC   1041

2.0 Zea mays full-length cDNA clone ZM_BFc0155O23 mRNA, complete cds NA coding protein psRNATarget
XM_008670504.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  |||||||||=|||||||||||||*
targets:84   UUUAGCCACGAACCAAACAGCCCC   107

2.0 PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA NA coding protein psRNATarget
NM_001137099.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  ||||||=||||||||||||||||*
targets:1506   UUUAGCUACAAACCAAACAGCCCC   1529

2.0 Zea mays KDEL-tailed cysteine endopeptidase CEP1 (cl903_-1), mRNA NA coding protein psRNATarget
AY109437.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  ||||||=||||||||||||||||*
targets:1516   UUUAGCUACAAACCAAACAGCCCC   1539

2.0 Zea mays CL903_-1 mRNA sequence NA coding protein psRNATarget
XM_008660313.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  |||||||||=|||||||||||||*
targets:797   UUUAGCCACGAACCAAACAGCCCC   820

2.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008660311.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  |||||||||=|||||||||||||*
targets:797   UUUAGCCACGAACCAAACAGCCCC   820

2.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008660309.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  |||||||||=|||||||||||||*
targets:797   UUUAGCCACGAACCAAACAGCCCC   820

2.0 PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670840.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  |||||||||=|||||||||||||*
targets:2762   UUUAGCCACGAACCAAACAGCCCC   2785

2.0 PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA NA coding protein psRNATarget
EU945170.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  ||||||||||||||||||||*|||
targets:942   UUUAGCCACAAACCAAACAGGCCU   965

1.5 Zea mays clone 243250 mRNA sequence NA coding protein psRNATarget
EU966347.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  ||||||||||||||||||||*|||
targets:1426   UUUAGCCACAAACCAAACAGGCCU   1449

1.5 Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds NA coding protein psRNATarget
XM_008676108.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1
  *|||||||||||||||||||-||||
targets:994   AUUAGCCACAAACCAAACAGGCCCU   1018

3.0 PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA NA coding protein psRNATarget
XM_020545710.1
ncRNA:24   AAAUCGGUGUUUGGUUUGU-CGGGA   1
  *||||||||||||||||||-|||||
targets:2661   GUUAGCCACAAACCAAACAAGCCCU   2685

3.0 PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA NA coding protein psRNATarget
BT083952.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  |||||||||*|||||||||||||*
targets:1571   UUUAGCCACCAACCAAACAGCCCC   1594

2.0 Zea mays full-length cDNA clone ZM_BFb0057K24 mRNA, complete cds NA coding protein psRNATarget
NM_001149469.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1
  ||||*|||||||||||||||-||||
targets:214   UUUAACCACAAACCAAACAGGCCCU   238

3.0 Zea mays uncharacterized LOC100275382 (LOC100275382), mRNA NA coding protein psRNATarget
EU955574.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUC-GGGA   1
  ||||*|||||||||||||||-||||
targets:214   UUUAACCACAAACCAAACAGGCCCU   238

3.0 Zea mays clone 1537438 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB163745.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||||||=||||||||||*|||
targets:103   GUUAGCCACGAACCAAACAGACCU   126

2.5 Sequence 1409 from Patent EP2559767 NA coding protein psRNATarget
LQ235414.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||||||=||||||||||*|||
targets:103   GUUAGCCACGAACCAAACAGACCU   126

2.5 Sequence 1409 from Patent EP2985353 NA coding protein psRNATarget
HI403284.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||||||=||||||||||*|||
targets:103   GUUAGCCACGAACCAAACAGACCU   126

2.5 Sequence 1409 from Patent EP2074227 NA coding protein psRNATarget
JB163853.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||||||=||||||||||*|||
targets:106   GUUAGCCACGAACCAAACAGGCCU   129

2.5 Sequence 1517 from Patent EP2559767 NA coding protein psRNATarget
LQ235522.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||||||=||||||||||*|||
targets:106   GUUAGCCACGAACCAAACAGGCCU   129

2.5 Sequence 1517 from Patent EP2985353 NA coding protein psRNATarget
HI403392.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||||||=||||||||||*|||
targets:106   GUUAGCCACGAACCAAACAGGCCU   129

2.5 Sequence 1517 from Patent EP2074227 NA coding protein psRNATarget
BT065116.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||||||=||||||||||*|||
targets:1067   GUUAGCCACGAACCAAACAGGCCU   1090

2.5 Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds NA coding protein psRNATarget
AY104775.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||*|*||||||||||||||||
targets:648   AUUAGGCUCAAACCAAACAGCCCU   671

2.0 Zea mays PCO061308 mRNA sequence NA coding protein psRNATarget
XM_008649194.2
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||*|*||||||||||||||||
targets:1114   AUUAGGCUCAAACCAAACAGCCCU   1137

2.0 PREDICTED: Zea mays D-aminoacyl-tRNA deacylase (AY104775), transcript variant X1, mRNA NA coding protein psRNATarget
BT035068.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||*|*||||||||||||||||
targets:1254   AUUAGGCUCAAACCAAACAGCCCU   1277

2.0 Zea mays full-length cDNA clone ZM_BFb0035J23 mRNA, complete cds NA coding protein psRNATarget
BT036147.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||*|*||||||||||||||||
targets:1255   AUUAGGCUCAAACCAAACAGCCCU   1278

2.0 Zea mays full-length cDNA clone ZM_BFb0098I08 mRNA, complete cds NA coding protein psRNATarget
NM_001138873.1
ncRNA:24   AAAUCGGUGUUUGGUUUGUCGGGA   1
  *||||*|*||||||||||||||||
targets:1255   AUUAGGCUCAAACCAAACAGCCCU   1278

2.0 Zea mays D-aminoacyl-tRNA deacylase (AY104775), mRNA NA coding protein psRNATarget
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