Search result

BaseInfo

ncRNA ID novel_zma_miR59
Species Zea mays
Class miRNA
Genome position Chr2:6811735-6811813 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089712;SRR2089714;SRR2089715;SRR2089698;SRR2089703;SRR2089704
Length 23
Mature sequence(if miRNA) 1 - CGGAGGGGAUUGGAGGGGCUAGA - 23
Stem-loop(if miRNA) --            GA             C       UU
  CGGAGGGGAUUG  GGGGCUAGAAUCA CUUCUUA  C
  ||||||||||||  ||||||||||||| |||||||  A
  GCCUCCCCUAAC  CCCUGAUCUUAGU GAAGAAU  A
UU            UA             A       UA
Stem-loop sequence CGGAGGGGAUUGGAGGGGCUAGAAUCACCUUCUUAUUCAAAUUAAGAAGAUGAUUCUAGUCCCAUCAAUCCCCUCCGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539411.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||||||||||||||
targets:3498   UUUAGCCCCUCCAAUCCCCUCCG   3520

0.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020539397.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||||||||||||||
targets:3533   UUUAGCCCCUCCAAUCCCCUCCG   3555

0.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA NA coding protein psRNATarget
LQ235519.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||||||=|||||||
targets:72   UUUAGCCCCUCCAAUUCCCUCCG   94

1.5 Sequence 1514 from Patent EP2985353 NA coding protein psRNATarget
JB163850.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||||||=|||||||
targets:72   UUUAGCCCCUCCAAUUCCCUCCG   94

1.5 Sequence 1514 from Patent EP2559767 NA coding protein psRNATarget
HI403389.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||||||=|||||||
targets:72   UUUAGCCCCUCCAAUUCCCUCCG   94

1.5 Sequence 1514 from Patent EP2074227 NA coding protein psRNATarget
HI405820.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||=|||||||||||
targets:200   UUUAGCCCCUCUAAUCCCCUCCG   222

1.5 Sequence 3945 from Patent EP2074227 NA coding protein psRNATarget
JB166281.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||=|||||||||||
targets:200   UUUAGCCCCUCUAAUCCCCUCCG   222

1.5 Sequence 3945 from Patent EP2559767 NA coding protein psRNATarget
LQ237950.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=|||||||||=|||||||||||
targets:200   UUUAGCCCCUCUAAUCCCCUCCG   222

1.5 Sequence 3945 from Patent EP2985353 NA coding protein psRNATarget
XM_008654495.2
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=||||||||=||||||||||||
targets:1111   UUUAGCCCCUUCAAUCCCCUCCG   1133

1.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
EZ074100.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |||||||||||||||||*|||||
targets:216   UCUAGCCCCUCCAAUCCACUCCG   238

1.5 TSA: Zea mays contig09737, mRNA sequence NA coding protein psRNATarget
AY108273.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  *=|||||||||||||||||||=|
targets:330   CUUAGCCCCUCCAAUCCCCUCUG   352

1.5 Zea mays PCO108913 mRNA sequence NA coding protein psRNATarget
BT065170.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=||*||||||||||||||||||
targets:682   UUUAUCCCCUCCAAUCCCCUCCG   704

1.0 Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds NA coding protein psRNATarget
XM_008667867.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=||*||||||||||||||||||
targets:1029   UUUAACCCCUCCAAUCCCCUCCG   1051

1.0 PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA NA coding protein psRNATarget
XM_008670893.2
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=||*||||||||||||||||||
targets:1562   UUUAUCCCCUCCAAUCCCCUCCG   1584

1.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008670890.2
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=||*||||||||||||||||||
targets:1582   UUUAUCCCCUCCAAUCCCCUCCG   1604

1.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670892.2
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=||*||||||||||||||||||
targets:1606   UUUAUCCCCUCCAAUCCCCUCCG   1628

1.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008670891.2
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  |=||*||||||||||||||||||
targets:1639   UUUAUCCCCUCCAAUCCCCUCCG   1661

1.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA NA coding protein psRNATarget
EU945351.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  ||||||||||||||*|||||||*
targets:413   UCUAGCCCCUCCAACCCCCUCCA   435

2.5 Zea mays clone 260481 mRNA sequence NA coding protein psRNATarget
XM_008672161.2
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  ||||||||||||||*|||||||*
targets:1265   UCUAGCCCCUCCAACCCCCUCCA   1287

2.5 PREDICTED: Zea mays TVP38/TMEM64 family membrane protein YtxB (LOC103647660), mRNA NA coding protein psRNATarget
EU941453.1
ncRNA:23   AGAUCGGGGAGGUUAGGGGAGGC   1
  *||||||||*||||||||||||*
targets:57   CCUAGCCCCCCCAAUCCCCUCCU   79

2.0 Zea mays clone 1453301 mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.