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BaseInfo

ncRNA ID novel_zma_miR58
Species Zea mays
Class miRNA
Genome position Chr2:69949079-69949213 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089713;SRR2089715
Length 24
Mature sequence(if miRNA) 1 - AGGGCUGAUUUGGUGGAUAGGGAU - 24
Stem-loop(if miRNA) --    C              G          G         A    GA            U   CAU
  AGGG UGAUUUGGUGGAUA GGAUCACGAG GGAUCCAUG GGGG  GAAUCCCCUUGC AUU   U
  |||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||||||| |||
  UCCC ACUAAACCACCUAU CCUAGUGCUC CCUAGGUAC CCUC  CUUAGGGGAACG UAA   U
AC    U              A          A         -    UC            U   AUU
Stem-loop sequence AGGGCUGAUUUGGUGGAUAGGGAUCACGAGGGGAUCCAUGAGGGGGAGAAUCCCCUUGCUAUUCAUUUUUAAAUUGCAAGGGGAUUCCUCUCCCAUGGAUCCACUCGUGAUCCAUAUCCACCAAAUCAUCCCUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY108273.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  ||||||||=|||||||||||=|||
targets:454   AUCCCUAUUCACCAAAUCAGUCCU   477

2.5 Zea mays PCO108913 mRNA sequence NA coding protein psRNATarget
BT066676.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  |||||||*||||||||||||||||
targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362

1.0 Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds NA coding protein psRNATarget
NM_001175907.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  |||||||*||||||||||||||||
targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362

1.0 Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA NA coding protein psRNATarget
JB163906.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  ||||||=*=|||||||||||||||
targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84

3.0 Sequence 1570 from Patent EP2559767 NA coding protein psRNATarget
LQ235575.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  ||||||=*=|||||||||||||||
targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84

3.0 Sequence 1570 from Patent EP2985353 NA coding protein psRNATarget
HI403445.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  ||||||=*=|||||||||||||||
targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84

3.0 Sequence 1570 from Patent EP2074227 NA coding protein psRNATarget
LQ235431.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  ||||||=*=|||||||||||||||
targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119

3.0 Sequence 1426 from Patent EP2985353 NA coding protein psRNATarget
HI403301.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  ||||||=*=|||||||||||||||
targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119

3.0 Sequence 1426 from Patent EP2074227 NA coding protein psRNATarget
JB163762.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  ||||||=*=|||||||||||||||
targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119

3.0 Sequence 1426 from Patent EP2559767 NA coding protein psRNATarget
BT038234.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  *|=|||||||||||||*|||||||
targets:1109   UUUCCUAUCCACCAAACCAGCCCU   1132

1.5 Zea mays full-length cDNA clone ZM_BFb0220G01 mRNA, complete cds NA coding protein psRNATarget
NM_001146901.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  *|=|||||||||||||*|||||||
targets:1234   UUUCCUAUCCACCAAACCAGCCCU   1257

1.5 Zea mays UMP-CMP kinase 3 (LOC100272426), mRNA NA coding protein psRNATarget
BT038688.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  *|=|||||||||||||*|||||||
targets:1234   UUUCCUAUCCACCAAACCAGCCCU   1257

1.5 Zea mays full-length cDNA clone ZM_BFb0309H03 mRNA, complete cds NA coding protein psRNATarget
XM_020545246.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  |||||||*=||||||||||||||*
targets:152   AUCCCUAAUCACCAAAUCAGCCCG   175

3.0 PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA NA coding protein psRNATarget
BT060864.1
ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1
  *|=|||*|||||||||*|||||||
targets:1479   UUUCCUCUCCACCAAACCAGCCCU   1502

2.5 Zea mays full-length cDNA clone ZM_BFb0062A14 mRNA, complete cds NA coding protein psRNATarget
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