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BaseInfo

ncRNA ID	novel_zma_miR55
Species	Zea mays
Class	miRNA
Genome position	Chr2:60631219-60631342 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713;SRR2089701;SRR2089703;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - ACAUUUUAAAUCUAGGACAUCCAU - 24
Stem-loop(if miRNA)	--             A            UG    -CAA  -- ---- A  AAUGGAGGGAGGUGG   ACAUUUUAAAUCU GGACAUCCAUCU  CAUC    UC  C    C CC               A   ||||||||||||| ||||||||||||  ||||    ||  |    | ||   UGUAAAAUUUAGA CCUGUAGGUAGA  GUAG    CU  C    U CA               A CG             C            GU    AUUG  GU GUGG -  AAAUAUUUCUUGUGG
Stem-loop sequence	ACAUUUUAAAUCUAGGACAUCCAUCUUGCAUCCAAUCCCACCAAUGGAGGGAGGUGGAAGGUGUUCUUUAUAAAACUGGUGCUGUCGUUAGAUGUGAGAUGGAUGUCCCAGAUUUAAAAUGUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646380.2	ncRNA:24   UACCUACAGGAUCUAAAUUUUACA   1   |||*|||||||||||||||||||| targets:807   AUGAAUGUCCUAGAUUUAAAAUGU   830 Target Full Sequence	0.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase UPL7 (LOC103625986), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661794.2	ncRNA:24   UACCUACAGGAUCUAAAUUUUACA   1   ||||||||==*||||||||||||| targets:1049   AUGGAUGUUUCAGAUUUAAAAUGU   1072 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008661793.2	ncRNA:24   UACCUACAGGAUCUAAAUUUUACA   1   ||||||||==*||||||||||||| targets:1040   AUGGAUGUUUCAGAUUUAAAAUGU   1063 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103639018 (LOC103639018), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020553522.1	ncRNA:19   ACAGGAUCUAAAUUUUACA   1   |||=||||||||||||||| targets:1   UGUUCUAGAUUUAAAAUGU   19 Target Full Sequence	1.0	PREDICTED: Zea mays MACPF domain-containing protein (LOC100383384), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645476.2	ncRNA:24   UACCUACAGGAUCUAAAUUUUACA   1   |||*|||**|*||||||||||||| targets:896   AUGAAUGCACCAGAUUUAAAAUGU   919 Target Full Sequence	3.0	PREDICTED: Zea mays tic20-like protein (LOC100282929), transcript variant X1, mRNA	NA	coding protein	psRNATarget