Search result

BaseInfo

ncRNA ID	novel_zma_miR51
Species	Zea mays
Class	miRNA
Genome position	Chr2:13948803-13948885 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089715;SRR2287162;SRR2287164;SRR5451003;SRR5451005;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	63 - CGGAGGGAUUGGAGGGGCUAA - 83
Stem-loop(if miRNA)	--       --A        G            UC       A   CGGAGGG   UUGGAGGG CUAAAAUCUCAU  UUAUUUA A   |||||||   |||||||| ||||||||||||  |||||||   GUCUCCC   AACCUCCC GAUUUUAGAGUA  AAUAAGU A UG       CUA        -            GA       U
Stem-loop sequence	CGGAGGGAUUGGAGGGGCUAAAAUCUCAUUCUUAUUUAAAAUUGAAUAAAGAUGAGAUUUUAGCCCUCCAAAUCCCCUCUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163850.1	ncRNA:21   AAUCGGGGAGGUUA-GGGAGGC   1   ||||||||||||||-||||||| targets:73   UUAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	3.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:21   AAUCGGGGAGGUUA-GGGAGGC   1   ||||||||||||||-||||||| targets:73   UUAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	3.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI403389.1	ncRNA:21   AAUCGGGGAGGUUA-GGGAGGC   1   ||||||||||||||-||||||| targets:73   UUAGCCCCUCCAAUUCCCUCCG   94 Target Full Sequence	3.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AAUCGGGGAGGUUAGGG-AGGC   1   |||||||||||||||||-|||| targets:3499   UUAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGGGAGGUUAGGG-AGGC   1   |||||||||||||||||-|||| targets:3534   UUAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	3.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:21   AAUCGGGGAGGUUAGG-GAGGC   1   *|||||||||||||||-||||| targets:217   CUAGCCCCUCCAAUCCACUCCG   238 Target Full Sequence	3.0	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
HI403355.1	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   **|*||||||||||||=|||| targets:37   CAAUCCCCUCCAAUCCUUCCG   57 Target Full Sequence	2.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   **|*||||||||||||=|||| targets:37   CAAUCCCCUCCAAUCCUUCCG   57 Target Full Sequence	2.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   **|*||||||||||||=|||| targets:37   CAAUCCCCUCCAAUCCUUCCG   57 Target Full Sequence	2.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
AY111670.1	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   **|*=|||||||||||||||| targets:14   CAACUCCCUCCAAUCCCUCCG   34 Target Full Sequence	2.0	Zea mays CL20712_1 mRNA sequence	NA	coding protein	psRNATarget
BT039083.1	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   *||*||=|||||||||||||* targets:1279   AUACCCUCUCCAAUCCCUCCA   1299 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0368P21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551172.1	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   *||*||=|||||||||||||* targets:1318   AUACCCUCUCCAAUCCCUCCA   1338 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100281458 (pco141348), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   **|*||||||=|||||||||| targets:1805   CAAUCCCCUCUAAUCCCUCCG   1825 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU941426.1	ncRNA:21   AAUCGGGGAGGUUAGGGAGGC   1   |||*|||*||||||||||||* targets:423   UUACCCCGUCCAAUCCCUCCA   443 Target Full Sequence	3.0	Zea mays clone 1450993 mRNA sequence	NA	coding protein	psRNATarget