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BaseInfo

ncRNA ID	novel_zma_miR46
Species	Zea mays
Class	miRNA
Genome position	Chr3:34134223-34134323 [-]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647389;SRR2647390;SRR2647391
Length	24
Mature sequence(if miRNA)	78 - AAUUUAUUCCACUUUAGUUACUAA - 101
Stem-loop(if miRNA)	--AA                 AC        C           A  A        UUUAUUCCACUUUAGUU  UAAAUUGU AAAUAUGGAAA UA AAUA     |||||||||||||||||  |||||||| ||||||||||| || |||G     AAAUAAGGUGAAAUCAG  AUUUAACG UUUAUACCUUU AU UUGA GGUA                 AU        U           G  A
Stem-loop sequence	AAUUUAUUCCACUUUAGUUACUAAAUUGUCAAAUAUGGAAAAUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGACUAAAGUGGAAUAAAAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647122.2	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   |||||=|||||||||||||||||| targets:3073   UUAGUGACUAAAGUGGAAUAAAUU   3096 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   |||||=|||||||||||||||||| targets:2684   UUAGUGACUAAAGUGGAAUAAAUU   2707 Target Full Sequence	1.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:2045   UUUGUAACUAAAGUGGAAUAAAAU   2068 Target Full Sequence	1.5	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:2045   UUUGUAACUAAAGUGGAAUAAAAU   2068 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:875   UUUGUAACUAAAGUGGAAUAAAAU   898 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
HI403041.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:113   UUUGUAACUAAAGUGGAAUAAAAU   136 Target Full Sequence	1.5	Sequence 1166 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235171.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:113   UUUGUAACUAAAGUGGAAUAAAAU   136 Target Full Sequence	1.5	Sequence 1166 from Patent EP2985353	NA	coding protein	psRNATarget
JB163502.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:113   UUUGUAACUAAAGUGGAAUAAAAU   136 Target Full Sequence	1.5	Sequence 1166 from Patent EP2559767	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:113   UUUGUAACUAAAGUGGAAUAAAAU   136 Target Full Sequence	1.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:113   UUUGUAACUAAAGUGGAAUAAAAU   136 Target Full Sequence	1.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:113   UUUGUAACUAAAGUGGAAUAAAAU   136 Target Full Sequence	1.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
JB170741.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:89   UUUGUAACUAAAGUGGAAUAAAAU   112 Target Full Sequence	1.5	Sequence 8405 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242410.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:89   UUUGUAACUAAAGUGGAAUAAAAU   112 Target Full Sequence	1.5	Sequence 8405 from Patent EP2985353	NA	coding protein	psRNATarget
HI410280.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|||||||||||||||||||*| targets:89   UUUGUAACUAAAGUGGAAUAAAAU   112 Target Full Sequence	1.5	Sequence 8405 from Patent EP2074227	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|*|||||||*||||||||||| targets:254   UUUGCAACUAAAAUGGAAUAAAUU   277 Target Full Sequence	1.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|*|||||||*||||||||||| targets:129   UUUGCAACUAAAAUGGAAUAAAUU   152 Target Full Sequence	1.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|*|||||||*||||||||||| targets:129   UUUGCAACUAAAAUGGAAUAAAUU   152 Target Full Sequence	1.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|*|||||||*||||||||||| targets:129   UUUGCAACUAAAAUGGAAUAAAUU   152 Target Full Sequence	1.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|*|||||||*||||||||||| targets:38   UUUGCAACUAAAAUGGAAUAAAUU   61 Target Full Sequence	1.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|*|||||||*||||||||||| targets:38   UUUGCAACUAAAAUGGAAUAAAUU   61 Target Full Sequence	1.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAUUGAUUUCACCUUAUUUAA   1   ||*|*|||||||*||||||||||| targets:38   UUUGCAACUAAAAUGGAAUAAAUU   61 Target Full Sequence	1.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget