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BaseInfo

ncRNA ID novel_zma_miR45
Species Zea mays
Class miRNA
Genome position Chr2:26408498-26408552 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089714;SRR2287031;SRR2287162;SRR2287163;SRR2089703;SRR2089706
Length 22
Mature sequence(if miRNA) 34 - UUGAGGUGGAUUGAGGCGUAAA - 55
Stem-loop(if miRNA) --      UG     AG C     UUA
  UUGAGG  GAUUG  G GUAAA   A
  ||||||  |||||  | |||||   A
  AACUCC  CUAAC  C CAUUU   C
AU      GU     CU A     UAU
Stem-loop sequence UUGAGGUGGAUUGAGGCGUAAAUUAAACUAUUUUACACUCCAAUCUGCCUCAAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403078.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  ||||||||||||||||||||||
targets:59   UUUACGCCUCAAUCCACCUCAA   80

0.0 Sequence 1203 from Patent EP2074227 NA coding protein psRNATarget
JB163539.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  ||||||||||||||||||||||
targets:59   UUUACGCCUCAAUCCACCUCAA   80

0.0 Sequence 1203 from Patent EP2559767 NA coding protein psRNATarget
LQ235208.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  ||||||||||||||||||||||
targets:59   UUUACGCCUCAAUCCACCUCAA   80

0.0 Sequence 1203 from Patent EP2985353 NA coding protein psRNATarget
HI403033.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*|||||||||||=||||
targets:59   UUUACACCUCAAUCCACUUCAA   80

2.5 Sequence 1158 from Patent EP2074227 NA coding protein psRNATarget
LQ235163.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*|||||||||||=||||
targets:59   UUUACACCUCAAUCCACUUCAA   80

2.5 Sequence 1158 from Patent EP2985353 NA coding protein psRNATarget
JB163494.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*|||||||||||=||||
targets:59   UUUACACCUCAAUCCACUUCAA   80

2.5 Sequence 1158 from Patent EP2559767 NA coding protein psRNATarget
EU941642.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  *||||*||||||||||||||||
targets:7   GUUACACCUCAAUCCACCUCAA   28

1.0 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
BT085755.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  *||||*||||||||||||||||
targets:880   GUUACACCUCAAUCCACCUCAA   901

1.0 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
NM_001156128.2
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  *||||*||||||||||||||||
targets:880   GUUACACCUCAAUCCACCUCAA   901

1.0 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
JB163690.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  *||||*||||||||||=|||||
targets:59   GUUACACCUCAAUCCAUCUCAA   80

2.5 Sequence 1354 from Patent EP2559767 NA coding protein psRNATarget
HI403229.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  *||||*||||||||||=|||||
targets:59   GUUACACCUCAAUCCAUCUCAA   80

2.5 Sequence 1354 from Patent EP2074227 NA coding protein psRNATarget
LQ235359.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  *||||*||||||||||=|||||
targets:59   GUUACACCUCAAUCCAUCUCAA   80

2.5 Sequence 1354 from Patent EP2985353 NA coding protein psRNATarget
HI403066.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*||*|||||||||||||
targets:58   UUUACACCCCAAUCCACCUCAA   79

2.0 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
LQ235196.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*||*|||||||||||||
targets:58   UUUACACCCCAAUCCACCUCAA   79

2.0 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
JB163527.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*||*|||||||||||||
targets:58   UUUACACCCCAAUCCACCUCAA   79

2.0 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
HI403263.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*=|*|||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAA   80

3.0 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
JB163723.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*=|*|||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAA   80

3.0 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
LQ235392.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*=|*|||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAA   80

3.0 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
JB163724.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*=|*|||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAA   80

3.0 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*=|*|||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAA   80

3.0 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
HI403262.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*=|*|||||||||||||
targets:59   UUUACAUCCCAAUCCACCUCAA   80

3.0 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
BT019068.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |||||*||*||||||||||||=
targets:221   UUUACACCACAAUCCACCUCAG   242

3.0 Zea mays clone Contig631.F mRNA sequence NA coding protein psRNATarget
XM_020548088.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  **|||*|||||||||||=||||
targets:5048   AAUACACCUCAAUCCACUUCAA   5069

2.5 PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA NA coding protein psRNATarget
AY110392.1
ncRNA:22   AA-AUGCGG-AGUUAGGUGGAGUU   1
  ||-|||*||-||||||||||||||
targets:147   UUAUACACCCUCAAUCCACCUCAA   170

3.0 Zea mays CL7038_2 mRNA sequence NA coding protein psRNATarget
JB163659.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |*|||**|||||||||||||||
targets:59   UGUACAACUCAAUCCACCUCAA   80

2.0 Sequence 1323 from Patent EP2559767 NA coding protein psRNATarget
LQ235328.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |*|||**|||||||||||||||
targets:59   UGUACAACUCAAUCCACCUCAA   80

2.0 Sequence 1323 from Patent EP2985353 NA coding protein psRNATarget
HI403198.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  |*|||**|||||||||||||||
targets:59   UGUACAACUCAAUCCACCUCAA   80

2.0 Sequence 1323 from Patent EP2074227 NA coding protein psRNATarget
NM_001176181.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  **|*|*||||||||||||||||
targets:1602   AAUCCCCCUCAAUCCACCUCAA   1623

2.0 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:22   AAAUGCGGAGUUAGGUGGAGUU   1
  **|*|*||||||||||||||||
targets:1602   AAUCCCCCUCAAUCCACCUCAA   1623

2.0 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
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