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BaseInfo

ncRNA ID	novel_zma_miR41
Species	Zea mays
Class	miRNA
Genome position	Chr10:23170590-23170671 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - GGAGGGAAUUGGAGGGGCUAA - 21
Stem-loop(if miRNA)	--      A   G                  CC       A   GGAGGG AUU GAGGGGCUAAAAUCCCCU  UUAUUCA U   |||||| ||| ||||||||||||||||||  |||||||   CUUCCC UAA UUCCCCGAUUUUAGGGGA  AAUAAGU U GG      C   A                  AA       U
Stem-loop sequence	GGAGGGAAUUGGAGGGGCUAAAAUCCCCUCCUUAUUCAAUUUUGAAUAAAAAGGGGAUUUUAGCCCCUUAAAUCCCCUUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163850.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||||||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||||||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||||||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	0.0	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||*|||||| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||*|||||| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   ||||||||||||||*|||||= targets:331   UUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:683   UUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1030   UUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1563   UUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1583   UUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1607   UUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AAUCGGGGAGGUUAAGGGAGG   1   |||*||||||||||*|||||| targets:1640   UUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget