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BaseInfo

ncRNA ID	novel_zma_miR38
Species	Zea mays
Class	miRNA
Genome position	Chr2:49976770-49976900 [-]
Reference genome	RefGen_v4
Source	SRR2089709
Length	25
Mature sequence(if miRNA)	107 - CCGGACUGUCCGGUGUACACCGGAA - 131
Stem-loop(if miRNA)	--      U                 AA       A  -CCCCA  G A    --AACU UGGAACUC   CCGGAC GUCCGGUGUACACCGGA  GUGUCCG UG      AG G GAGC      C        G   |||||| |||||||||||||||||  ||||||| ||      || | ||||      |   GGCCUG CAGGCCACAUGUGGCCU  UACAGGC AC      UC C CUCG      G        C GU      U                 -G       C  UUAAUA  G -    CUUAAG GCUUCGAC
Stem-loop sequence	CCGGACUGUCCGGUGUACACCGGAAAGUGUCCGAUGCCCCAAGGGAGAGCAACUCUGGAACUCGCCAGCUUCGGGAAUUCGCUCCGCUAUAAUUCACCGGACAUGUCCGGUGUACACCGGACUGUCCGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409351.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||||||||| targets:27   GUCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	0.0	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
JB169812.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||||||||| targets:27   GUCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	0.0	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||||||||| targets:27   GUCCGGUGUACACCGGACAGUCCGG   51 Target Full Sequence	0.0	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241238.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||||||||| targets:114   GUCCGGUGUACACCGGACAGUCCGG   138 Target Full Sequence	0.0	Sequence 7233 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241238.1	ncRNA:25   AAGGCCACAUGUGGCCUGU-CAGGCC   1   *||||||||||||||||||-|||||| targets:8   GUCCGGUGUACACCGGACAUGUCCGG   33 Target Full Sequence	3.0	Sequence 7233 from Patent EP2985353	NA	coding protein	psRNATarget
HI409108.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||||||||| targets:114   GUCCGGUGUACACCGGACAGUCCGG   138 Target Full Sequence	0.0	Sequence 7233 from Patent EP2074227	NA	coding protein	psRNATarget
HI409108.1	ncRNA:25   AAGGCCACAUGUGGCCUGU-CAGGCC   1   *||||||||||||||||||-|||||| targets:8   GUCCGGUGUACACCGGACAUGUCCGG   33 Target Full Sequence	3.0	Sequence 7233 from Patent EP2074227	NA	coding protein	psRNATarget
JB169569.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||||||||| targets:114   GUCCGGUGUACACCGGACAGUCCGG   138 Target Full Sequence	0.0	Sequence 7233 from Patent EP2559767	NA	coding protein	psRNATarget
JB169569.1	ncRNA:25   AAGGCCACAUGUGGCCUGU-CAGGCC   1   *||||||||||||||||||-|||||| targets:8   GUCCGGUGUACACCGGACAUGUCCGG   33 Target Full Sequence	3.0	Sequence 7233 from Patent EP2559767	NA	coding protein	psRNATarget
EU950973.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||||||||| targets:179   GUCCGGUGUGCACCGGACAGUCCGG   203 Target Full Sequence	1.0	Zea mays clone 677173 mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||*|||||| targets:521   GUCCGGUGUACACCGGACUGUCCGG   545 Target Full Sequence	1.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
EU948808.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:765   GUCCGGUGUGCACCGGACUGUCCGG   789 Target Full Sequence	2.5	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
JB170509.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:106   GUCCGGUGCACACCGGACAGUCCGG   130 Target Full Sequence	1.0	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242178.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:106   GUCCGGUGCACACCGGACAGUCCGG   130 Target Full Sequence	1.0	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
HI410048.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:106   GUCCGGUGCACACCGGACAGUCCGG   130 Target Full Sequence	1.0	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
BT069634.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||*|||||| targets:717   GUCCGGUGUACACCGGACUGUCCGG   741 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||*|||||| targets:717   GUCCGGUGUACACCGGACUGUCCGG   741 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
JB170471.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||*|||||| targets:114   GUCCGGUGUACACCGGACUGUCCGG   138 Target Full Sequence	1.5	Sequence 8135 from Patent EP2559767	NA	coding protein	psRNATarget
HI410010.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||*|||||| targets:114   GUCCGGUGUACACCGGACUGUCCGG   138 Target Full Sequence	1.5	Sequence 8135 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242140.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||*|||||| targets:114   GUCCGGUGUACACCGGACUGUCCGG   138 Target Full Sequence	1.5	Sequence 8135 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1507   GUCCGGUGUGCACCGGACUGUCCGG   1531 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
NM_001176839.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1751   GUCCGGUGUGCACCGGACUGUCCGG   1775 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA	NA	coding protein	psRNATarget
BT069667.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1507   GUCCGGUGUGCACCGGACUGUCCGG   1531 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
BT069667.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1751   GUCCGGUGUGCACCGGACUGUCCGG   1775 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:467   GUCCGGUGCACACCGGACAGUCCGG   491 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:597   GUCCGGUGCACACCGGACAGUCCGG   621 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:721   GUCCGGUGCACCACCGGACAGUCCGG   746 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241409.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:106   GUCCGGUGUGCACCGGACUGUCCGG   130 Target Full Sequence	2.5	Sequence 7404 from Patent EP2985353	NA	coding protein	psRNATarget
JB169740.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:106   GUCCGGUGUGCACCGGACUGUCCGG   130 Target Full Sequence	2.5	Sequence 7404 from Patent EP2559767	NA	coding protein	psRNATarget
HI409279.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:106   GUCCGGUGUGCACCGGACUGUCCGG   130 Target Full Sequence	2.5	Sequence 7404 from Patent EP2074227	NA	coding protein	psRNATarget
BT065201.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:739   GUCCGGUGCACACCGGACAGUCCGG   763 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:619   GUCCGGUGCACACCGGACAGUCCGG   643 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:733   GUCCGGUGCACACCGGACAGUCCGG   757 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:836   GUCCGGUGCACACCGGACAGUCCGG   860 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:619   GUCCGGUGCACACCGGACAGUCCGG   643 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:733   GUCCGGUGCACACCGGACAGUCCGG   757 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:836   GUCCGGUGCACACCGGACAGUCCGG   860 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT036301.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||||||||||||*|||||| targets:824   GUCCGGUGUACACCGGACUGUCCGG   848 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
BT036301.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:999   GUCCGGUGUGCACCGGACUGUCCGG   1023 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:711   GUCCGGUGCACACCGGACAGUCCGG   735 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:711   GUCCGGUGCACACCGGACAGUCCGG   735 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:280   GUCCGGUGCACACCGGACAGUCCGG   304 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:596   GUCCGGUGCACACCGGACAGUCCGG   620 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:694   GUCCGGUGCACACCGGACAGUCCGG   718 Target Full Sequence	1.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:797   GUCCGGUGCACCACCGGACAGUCCGG   822 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:596   GUCCGGUGCACACCGGACAGUCCGG   620 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:694   GUCCGGUGCACACCGGACAGUCCGG   718 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:797   GUCCGGUGCACCACCGGACAGUCCGG   822 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:444   GUCCGGUGCACACCGGACAGUCCGG   468 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:558   GUCCGGUGCACACCGGACAGUCCGG   582 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:660   GUCCGGUGCACCACCGGACAGUCCGG   685 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:444   GUCCGGUGCACACCGGACAGUCCGG   468 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:558   GUCCGGUGCACACCGGACAGUCCGG   582 Target Full Sequence	1.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:660   GUCCGGUGCACCACCGGACAGUCCGG   685 Target Full Sequence	3.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:406   GUCCGGUGCACACCGGACAGUCCGG   430 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|*|||||*|||||||||||||||| targets:292   GUACGGUGCACACCGGACAGUCCGG   316 Target Full Sequence	1.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *||=||||*||-|||||||||||||| targets:530   GUCUGGUGCACCACCGGACAGUCCGG   555 Target Full Sequence	3.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:1396   GUCCGGUGCACACCGGACAGUCCGG   1420 Target Full Sequence	1.0	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:4491   GUCCGGUGCACACCGGACAGUCCGG   4515 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||||| targets:4606   GUCCGGUGCACACCGGACAGUCCGG   4630 Target Full Sequence	1.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:4708   GUCCGGUGCACCACCGGACAGUCCGG   4733 Target Full Sequence	3.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
EU964336.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||=|||||=||||||||*|||||| targets:568   GUCUGGUGUGCACCGGACUGUCCGG   592 Target Full Sequence	2.5	Zea mays clone 278065 mRNA sequence	NA	coding protein	psRNATarget
EU964665.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:890   GUCCGGUGUGCACCGGACUGUCCGG   914 Target Full Sequence	2.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU964665.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1100   GUCCGGUGUGCACCGGACUGUCCGG   1124 Target Full Sequence	2.5	Zea mays clone 280715 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT070124.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:870   GUCCGGUGUGCACCGGACUGUCCGG   894 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
BT070124.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1080   GUCCGGUGUGCACCGGACUGUCCGG   1104 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0099M20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:870   GUCCGGUGUGCACCGGACUGUCCGG   894 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
NM_001176974.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1080   GUCCGGUGUGCACCGGACUGUCCGG   1104 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384437 (LOC100384437), mRNA	NA	coding protein	psRNATarget
BT054327.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1446   GUCCGGUGUGCACCGGACUGUCCGG   1470 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0334B17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152486.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:1446   GUCCGGUGUGCACCGGACUGUCCGG   1470 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100279484), mRNA	NA	coding protein	psRNATarget
EZ079086.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:48   GUCCGGUGUGCACCGGACUGUCCGG   72 Target Full Sequence	2.5	TSA: Zea mays contig14725, mRNA sequence	NA	coding protein	psRNATarget
EZ049532.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:47   GUCCGGUGUGCACCGGACUGUCCGG   71 Target Full Sequence	2.5	TSA: Zea mays contig50650, mRNA sequence	NA	coding protein	psRNATarget
EU971710.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:216   GUCCGGUGUGCACCGGACUGUCCGG   240 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
EU971710.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *||||||||=||||||||*|||||| targets:411   GUCCGGUGUGCACCGGACUGUCCGG   435 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget
BT086229.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*||||=||||||||||| targets:530   GUCCGGUGCACACUGGACAGUCCGG   554 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:644   GUCCGGUGAACCACCGGACAGUCCGG   669 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*||||=||||||||||| targets:2652   GUCCGGUGCACACUGGACAGUCCGG   2676 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||||||=|| targets:2766   GUCCGGUGCACACCGGACAGUCUGG   2790 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
HI408938.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
JB170644.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
HI410183.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
JB169499.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
JB169399.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
HI409038.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
HI409440.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
JB169901.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:27   GUCCGGUGCACCACCGGACAGUCCGG   52 Target Full Sequence	3.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:25   AAGGCCACA-UGUGGCCUGUCAGGCC   1   *|||||||*-|||||||||||||||| targets:91   GUCCGGUGGCACACCGGACAGUCCGG   116 Target Full Sequence	3.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT069074.2	ncRNA:25   AAGGCCAC-AUGUGGCCUGUCAGGCC   1   *|||||||-|*||||||||||||||| targets:677   GUCCGGUGCUUCACCGGACAGUCCGG   702 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:25   AAGGCCACA-UGUGGCCUGUCAGGCC   1   *|||||||*-|||||||||||||||| targets:794   GUCCGGUGGCACACCGGACAGUCCGG   819 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:25   AAGGCCACA-UGUGGCCUGUCAGGCC   1   *||||*||*-|||||||||||||||| targets:692   CUCCGCUGGCACACCGGACAGUCCGG   717 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *|||||||*||-|||||||||||||| targets:847   GUCCGGUGCACCACCGGACAGUCCGG   872 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||*|||||||| targets:608   GUCCGGUGCACACCGGUCAGUCCGG   632 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
JB170297.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||*|||||| targets:32   GUCCGGUGCACACCGGACUGUCCGG   56 Target Full Sequence	2.5	Sequence 7961 from Patent EP2559767	NA	coding protein	psRNATarget
HI409836.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||*|||||| targets:32   GUCCGGUGCACACCGGACUGUCCGG   56 Target Full Sequence	2.5	Sequence 7961 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241966.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||*|||||| targets:32   GUCCGGUGCACACCGGACUGUCCGG   56 Target Full Sequence	2.5	Sequence 7961 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:25   AAGGC----CAC-AUGUGGCCUGUCAGGCC   1   |||=|----|||-|=||||||||||||||| targets:140   UUCUGUCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	3.0	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
JB170574.1	ncRNA:25   AAGGC----CAC-AUGUGGCCUGUCAGGCC   1   |||=|----|||-|=||||||||||||||| targets:140   UUCUGUCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	3.0	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
HI410113.1	ncRNA:25   AAGGC----CAC-AUGUGGCCUGUCAGGCC   1   |||=|----|||-|=||||||||||||||| targets:140   UUCUGUCGAGUGGUGCACCGGACAGUCCGG   169 Target Full Sequence	3.0	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242039.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *||=||||*||-|||||||||||||| targets:29   GUCUGGUGCACCACCGGACAGUCCGG   54 Target Full Sequence	3.0	Sequence 8034 from Patent EP2985353	NA	coding protein	psRNATarget
HI409909.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *||=||||*||-|||||||||||||| targets:29   GUCUGGUGCACCACCGGACAGUCCGG   54 Target Full Sequence	3.0	Sequence 8034 from Patent EP2074227	NA	coding protein	psRNATarget
JB170370.1	ncRNA:25   AAGGCCACAUG-UGGCCUGUCAGGCC   1   *||=||||*||-|||||||||||||| targets:29   GUCUGGUGCACCACCGGACAGUCCGG   54 Target Full Sequence	3.0	Sequence 8034 from Patent EP2559767	NA	coding protein	psRNATarget
BT016820.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   *|||||||*|||||||||*|||||| targets:200   GUCCGGUGCACACCGGACUGUCCGG   224 Target Full Sequence	2.5	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
BT016820.1	ncRNA:25   AAGGCCACAUGUGGCCUGUCAGGCC   1   ****||*|||||||||||*|||||| targets:3   ACGAGGGGUACACCGGACUGUCCGG   27 Target Full Sequence	2.5	Zea mays clone Contig653 mRNA sequence	NA	coding protein	psRNATarget
BT061709.2	ncRNA:25   AAGGCCAC-AUGUGGCCUGUCAGGCC   1   *||||*||-|=||||||||||||||| targets:818   CUCCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:25   AAGGCCAC-AUGUGGCCUGUCAGGCC   1   *||||*||-|=||||||||||||||| targets:818   CUCCGCUGGUGCACCGGACAGUCCGG   843 Target Full Sequence	3.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
HI409410.1	ncRNA:25   AAGGCCACA-UGUGGCCUGUCAGGCC   1   *|||**||*-|||||||||||||||| targets:7   CUCCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	3.0	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:25   AAGGCCACA-UGUGGCCUGUCAGGCC   1   *|||**||*-|||||||||||||||| targets:7   CUCCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	3.0	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
JB169871.1	ncRNA:25   AAGGCCACA-UGUGGCCUGUCAGGCC   1   *|||**||*-|||||||||||||||| targets:7   CUCCACUGGCACACCGGACAGUCCGG   32 Target Full Sequence	3.0	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget