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BaseInfo

ncRNA ID	novel_zma_miR35
Species	Zea mays
Class	miRNA
Genome position	Chr2:56082085-56082203 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089702
Length	24
Mature sequence(if miRNA)	1 - AAUAGAAUAAAGUGGAGGGACUAA - 24
Stem-loop(if miRNA)	--        A        UC      AUC C      AC      UA          C   AGUCCCUU AUUUUAUU  AUUUUA   C UAAAUU  UAAAUG  GAAACUAAAA U   |||||||| ||||||||  ||||||   | ||||||  ||||||  |||||||||| C   UCAGGGAG UGAAAUAA  UAAAAU   G AUUUAA  AUUUAU  CUUUGAUUUU U AA        G        GA      CAA U      CA      CC          A
Stem-loop sequence	AGUCCCUUAAUUUUAUUUCAUUUUAAUCCCUAAAUUACUAAAUGUAGAAACUAAAACUCUAUUUUAGUUUCCCUAUUUAACAAUUUAUGAACUAAAAUAGAAUAAAGUGGAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001112512.2	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:1666   UUAGUCCCUUCAUUUUAUUCUAUU   1689 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||*||=||||||||||| targets:1569   UUAGUCCCUACAUUUUAUUCUAUU   1592 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:836   UUAGUCCCUUCAUUUUAUUCUAUU   859 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||=||=||||||||||| targets:27   UUAGUCCCUUCAUUUUAUUCUAUU   50 Target Full Sequence	2.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||||||||*|||||||| targets:1218   UUAGUCCCUCCACUUAAUUCUAUU   1241 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
HI406614.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||*|||||||||||||||| targets:155   UUAGUCCAUCCACUUUAUUCUAUU   178 Target Full Sequence	1.0	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||*|||||||||||||||| targets:155   UUAGUCCAUCCACUUUAUUCUAUU   178 Target Full Sequence	1.0	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||*|||||||||||||||| targets:155   UUAGUCCAUCCACUUUAUUCUAUU   178 Target Full Sequence	1.0	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
HI408748.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||*|||||||||||||||| targets:1   UUAGUCCAUCCACUUUAUUCUAUU   24 Target Full Sequence	1.0	Sequence 6873 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240878.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||*|||||||||||||||| targets:1   UUAGUCCAUCCACUUUAUUCUAUU   24 Target Full Sequence	1.0	Sequence 6873 from Patent EP2985353	NA	coding protein	psRNATarget
JB169209.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||*|||||||||||||||| targets:1   UUAGUCCAUCCACUUUAUUCUAUU   24 Target Full Sequence	1.0	Sequence 6873 from Patent EP2559767	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   ||||||=|||||||||||||*||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   ||||||=|||||||||||||*||| targets:1124   UUAGUCUCUCCACUUUAUUCCAUU   1147 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||*||=||||||||||| targets:69   UUAGUCCCUACAUUUUAUUCUAUU   92 Target Full Sequence	2.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   AAUCAGGGAGGUGAAAUAAGAUAA   1   |||||||||*||||||||||*||| targets:27   UUAGUCCCUACACUUUAUUCCAUU   50 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget