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BaseInfo

ncRNA ID novel_zma_miR34
Species Zea mays
Class miRNA
Genome position Chr2:33295943-33296008 [+]
Reference genome RefGen_v4
Source SRR2089708;SRR1997865;SRR1997866
Length 22
Mature sequence(if miRNA) 45 - UGAAAAAGGUGGGUGCGUUUGU - 66
Stem-loop(if miRNA) --    U      G  C  C   AAAU      U
  AAAC UAUCCA CU UU CAU    ACUUCG U
  |||| |||||| || || |||    ||||||
  UUUG GUGGGU GA AA GUA    UGGAGU C
UG    C      G  A  A   --CU      A
Stem-loop sequence AAACUUAUCCAGCUCUUCCAUAAAUACUUCGUUCAUGAGGUUCAUGAAAAAGGUGGGUGCGUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB169819.1
ncRNA:22   UGUUUGCGUGGGUGGAAAAAGU   1
  ||||||||||||=|||||||||
targets:128   ACAAACGCACCCGCCUUUUUCA   149

1.5 Sequence 7483 from Patent EP2559767 NA coding protein psRNATarget
LQ241488.1
ncRNA:22   UGUUUGCGUGGGUGGAAAAAGU   1
  ||||||||||||=|||||||||
targets:128   ACAAACGCACCCGCCUUUUUCA   149

1.5 Sequence 7483 from Patent EP2985353 NA coding protein psRNATarget
HI409358.1
ncRNA:22   UGUUUGCGUGGGUGGAAAAAGU   1
  ||||||||||||=|||||||||
targets:128   ACAAACGCACCCGCCUUUUUCA   149

1.5 Sequence 7483 from Patent EP2074227 NA coding protein psRNATarget
XM_008682725.2
ncRNA:22   UGUUUG-CGUGGGUGGAAAAAGU   1
  =*||||-|||||||||||||||=
targets:216   GGAAACUGCACCCACCUUUUUCG   238

3.0 PREDICTED: Zea mays Nucleotide/sugar transporter family protein (LOC100191213), transcript variant X2, mRNA NA coding protein psRNATarget