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BaseInfo

ncRNA ID	novel_zma_miR31
Species	Zea mays
Class	miRNA
Genome position	Chr2:135649637-135649700 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	41 - CAUAGCACUCGGCAAAGAAGACAC - 64
Stem-loop(if miRNA)	--C                    CACACC  A    AUAGCACUCGGCAAAGAAGA      UG G    ||||||||||||||||||||      || A    UGUCGUGAGCUGUUUCUUCU      AC A UGA                    -AAAUA  C
Stem-loop sequence	CAUAGCACUCGGCAAAGAAGACACACCUGAGAACCAAUAAAUCUUCUUUGUCGAGUGCUGUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238902.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *||*||||||||||||||*||||| targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	1.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *||*||||||||||||||*||||| targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	1.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *||*||||||||||||||*||||| targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	1.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239197.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |**||*|||||||||||||||||| targets:11   GAUUCGUCUUUGCCGAGUGCUAUG   34 Target Full Sequence	1.0	Sequence 5192 from Patent EP2985353	NA	coding protein	psRNATarget
HI407067.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |**||*|||||||||||||||||| targets:11   GAUUCGUCUUUGCCGAGUGCUAUG   34 Target Full Sequence	1.0	Sequence 5192 from Patent EP2074227	NA	coding protein	psRNATarget
JB167528.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |**||*|||||||||||||||||| targets:11   GAUUCGUCUUUGCCGAGUGCUAUG   34 Target Full Sequence	1.0	Sequence 5192 from Patent EP2559767	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |||-||||||||||||||||*||* targets:165   GUG-CUUCUUUGCCGAGUGCCAUA   187 Target Full Sequence	2.5	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |||-||||||||||||||||*||* targets:165   GUG-CUUCUUUGCCGAGUGCCAUA   187 Target Full Sequence	2.5	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |||-||||||||||||||||*||* targets:165   GUG-CUUCUUUGCCGAGUGCCAUA   187 Target Full Sequence	2.5	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *|***||||||||||||||=|||| targets:2   UUAGGUUCUUUGCCGAGUGUUAUG   25 Target Full Sequence	1.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *|***||||||||||||||=|||| targets:2   UUAGGUUCUUUGCCGAGUGUUAUG   25 Target Full Sequence	1.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *|***||||||||||||||=|||| targets:2   UUAGGUUCUUUGCCGAGUGUUAUG   25 Target Full Sequence	1.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
HI406743.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   ****|||||||*|||||||||||| targets:41   AAAGCUUCUUUACCGAGUGCUAUG   64 Target Full Sequence	1.5	Sequence 4868 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238873.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   ****|||||||*|||||||||||| targets:41   AAAGCUUCUUUACCGAGUGCUAUG   64 Target Full Sequence	1.5	Sequence 4868 from Patent EP2985353	NA	coding protein	psRNATarget
JB167204.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   ****|||||||*|||||||||||| targets:41   AAAGCUUCUUUACCGAGUGCUAUG   64 Target Full Sequence	1.5	Sequence 4868 from Patent EP2559767	NA	coding protein	psRNATarget