Search result

BaseInfo

ncRNA ID	osa-miR171e-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:1970487-1970605 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	89 - UGAUUGAGCCGUGCCAAUAUC - 109
Stem-loop(if miRNA)	-U    G   U         U       C     C     UGGC    U  ---A       C   GGUA CUA GAUGUUGGC CGGCUCA UCAGA GGCAU    GUGA GC    AAGCAUG A   |||| ||| ||||||||| ||||||| ||||| |||||    |||| ||    |||||||   UCGU GAU CUAUAACCG GCCGAGU AGUCU UUGUG    CACU CG    UUCGUGC U UC    -   U         U       U     -     --UU    -  AUCG       G
Stem-loop sequence	UGGUAGCUAUGAUGUUGGCUCGGCUCACUCAGACGGCAUUGGCGUGAUGCAAAGCAUGCAUGCGUGCUUGCUAGCUCACUUGUGUUUCUGAUUGAGCCGUGCCAAUAUCUUAGUGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JX310318.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:441   GAUAUUGGCGCGGCUCAAUCA   461 Target Full Sequence	1.5	Oryza sativa cultivar Dongjin scarecrow-like transcription factor GRAS1 (GRAS1) mRNA, complete cds	NA	coding protein	psRNATarget
AK120317.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:906   GAUAUUGGCGCGGCUCAAUCA   926 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013055O12, full insert sequence	NA	coding protein	psRNATarget
AK066248.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:906   GAUAUUGGCGCGGCUCAAUCA   926 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013055O11, full insert sequence	NA	coding protein	psRNATarget
AK100757.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1324   GAUAUUGGCGCGGCUCAAUCA   1344 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023118P13, full insert sequence	NA	coding protein	psRNATarget
AK072900.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1351   GAUAUUGGCGCGGCUCAAUCA   1371 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023145A02, full insert sequence	NA	coding protein	psRNATarget
XM_015781657.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1476   GAUAUUGGCGCGGCUCAAUCA   1496 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 27 (LOC4336617), mRNA	scarecrow-like protein 27(LOC4336617)	coding protein	psRNATarget
XM_015771930.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1375   GAUAUUGGCGCGGCUCAAUCA   1395 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 6 (LOC4330230), transcript variant X2, mRNA	scarecrow-like protein 6(LOC4330230)	coding protein	psRNATarget
AK101035.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1527   GAUAUUGGCGCGGCUCAAUCA   1547 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023150P14, full insert sequence	NA	coding protein	psRNATarget
XM_015771585.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1524   GAUAUUGGCGCGGCUCAAUCA   1544 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 6 (LOC4330231), mRNA	scarecrow-like protein 6(LOC4330231)	coding protein	psRNATarget
XM_015771929.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1375   GAUAUUGGCGCGGCUCAAUCA   1395 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group scarecrow-like protein 6 (LOC4330230), transcript variant X1, mRNA	scarecrow-like protein 6(LOC4330230)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:21901091 "Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"; Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y; PLoS Pathog. 7:e1002176(2011).