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BaseInfo

ncRNA ID	novel_zma_miR29
Species	Zea mays
Class	miRNA
Genome position	Chr2:142391939-142392003 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287160;SRR2287161;SRR2287162;SRR2287164;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	42 - AUGUGUUGAGGUGGAUUGAGGUGU - 65
Stem-loop(if miRNA)	--                          A      AUGUGUUGAGGUGGAUUGAGGUGUAA UUAG   |||||||||||||||||||||||||| |||U   UACAUAACUCCAUCUAACUCCACAUU AAUU UG                          G
Stem-loop sequence	AUGUGUUGAGGUGGAUUGAGGUGUAAAUUAGUUUAAGUUACACCUCAAUCUACCUCAAUACAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU941642.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||||||||||||||||||=|||| targets:10   ACACCUCAAUCCACCUCAAUACAU   33 Target Full Sequence	1.5	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||||||||||||||||||=|||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||||||||||||||||||=|||| targets:883   ACACCUCAAUCCACCUCAAUACAU   906 Target Full Sequence	1.5	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
AY110392.1	ncRNA:24   UGUGG-AGUUAGGUGGAGUUGUGUA   1   |||||-||||||||||||||||||| targets:151   ACACCCUCAAUCCACCUCAACACAU   175 Target Full Sequence	2.0	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||*|||||||||||||||||||| targets:62   ACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	0.0	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||*|||||||||||||||||||| targets:62   ACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	0.0	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||*|||||||||||||||||||| targets:62   ACAACUCAAUCCACCUCAACACAU   85 Target Full Sequence	0.0	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||||*|||||||||||||=|||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   ||||*|=||||||||||||||||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	1.0	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   ||||*|=||||||||||||||||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	1.0	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   ||||*|=||||||||||||||||| targets:60   ACACAUUAAUCCACCUCAACACAU   83 Target Full Sequence	1.0	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
HI403066.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||||*|||||||||||||=|||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
JB163527.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||||*|||||||||||||=|||| targets:61   ACACCCCAAUCCACCUCAAUACAU   84 Target Full Sequence	2.5	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||=|*|||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||=|*|||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||=|*|||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||=|*|||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||=|*|||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |||=|*|||||||||||||||||| targets:62   ACAUCCCAAUCCACCUCAACACAU   85 Target Full Sequence	1.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   UGU---GGAGUUAGGUGGAGUUGUGUA   1   |||---||||||||||=|||||||||| targets:808   ACAAGCCCUCAAUCCAUCUCAACACAU   834 Target Full Sequence	1.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   UGU---GGAGUUAGGUGGAGUUGUGUA   1   |||---||||||||||=|||||||||| targets:808   ACAAGCCCUCAAUCCAUCUCAACACAU   834 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   UGU---GGAGUUAGGUGGAGUUGUGUA   1   |||---||||||||||=|||||||||| targets:1051   ACAAGCCCUCAAUCCAUCUCAACACAU   1077 Target Full Sequence	1.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |=||*|||||||||=||||||||| targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	1.5	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget
HI402937.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |=||*|||||||||=||||||||| targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	1.5	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
JB163398.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |=||*|||||||||=||||||||| targets:61   AUACAUCAAUCCACUUCAACACAU   84 Target Full Sequence	1.5	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   ||||=*=|||=||||||||||||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	3.0	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   ||||=*=|||=||||||||||||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	3.0	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   ||||=*=|||=||||||||||||| targets:62   ACACUAUAAUUCACCUCAACACAU   85 Target Full Sequence	3.0	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
HI403486.1	ncRNA:24   UGUGGAGUU-AGGUGGAGUUGUGUA   1   ||||-||||-||||||||||||||| targets:58   ACAC-UCAAAUCCACCUCAACACAU   81 Target Full Sequence	2.0	Sequence 1611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235616.1	ncRNA:24   UGUGGAGUU-AGGUGGAGUUGUGUA   1   ||||-||||-||||||||||||||| targets:58   ACAC-UCAAAUCCACCUCAACACAU   81 Target Full Sequence	2.0	Sequence 1611 from Patent EP2985353	NA	coding protein	psRNATarget
JB163947.1	ncRNA:24   UGUGGAGUU-AGGUGGAGUUGUGUA   1   ||||-||||-||||||||||||||| targets:58   ACAC-UCAAAUCCACCUCAACACAU   81 Target Full Sequence	2.0	Sequence 1611 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008672302.2	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |=|*|*|||||||||||||||||| targets:2495   AUAACACAAUCCACCUCAACACAU   2518 Target Full Sequence	1.0	PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA	NA	coding protein	psRNATarget
JB167199.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   **|=|*|||||||||||||=|||| targets:64   UGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	2.5	Sequence 4863 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238868.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   **|=|*|||||||||||||=|||| targets:64   UGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	2.5	Sequence 4863 from Patent EP2985353	NA	coding protein	psRNATarget
HI406738.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   **|=|*|||||||||||||=|||| targets:64   UGAUCCCAAUCCACCUCAAUACAU   87 Target Full Sequence	2.5	Sequence 4863 from Patent EP2074227	NA	coding protein	psRNATarget
EU963895.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   **|=|*|||||||||||||=|||| targets:980   UGAUCCCAAUCCACCUCAAUACAU   1003 Target Full Sequence	2.5	Zea mays clone 273839 protein SFT2 mRNA, complete cds	NA	coding protein	psRNATarget
BT083733.2	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   *||=||||*|||||||||||||*| targets:9   UCAUCUCAUUCCACCUCAACACUU   32 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0033E22 mRNA, complete cds	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   UGUGGAGUUAGGUGGAGUUGUGUA   1   |*|==*|||||||||||||=|||| targets:1191   AAAUUCCAAUCCACCUCAAUACAU   1214 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget