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BaseInfo

ncRNA ID	novel_zma_miR26
Species	Zea mays
Class	miRNA
Genome position	Chr3:35691458-35691545 [+]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2638137;SRR2647386
Length	24
Mature sequence(if miRNA)	65 - AUCAAUUCCCUCCAAUCCAUAUGG - 88
Stem-loop(if miRNA)	--          AG         --------     UUUCAAUCCAUA   AUAUGGAUUG  GGGGAUUGA        GGGGG            G   ||||||||||  |||||||||        |||||   UAUACCUAAC  CCCUUAACU        CCCUC            U GG          CU         AUGCCUAA     UCUAAAACUGAA
Stem-loop sequence	AUAUGGAUUGAGGGGGAUUGAGGGGGUUUCAAUCCAUAGUAAGUCAAAAUCUCUCCCAAUCCGUAUCAAUUCCCUCCAAUCCAUAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409817.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:13   CCAUAUGGAUUGGAGGGGAUUGAU   36 Target Full Sequence	1.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:13   CCAUAUGGAUUGGAGGGGAUUGAU   36 Target Full Sequence	1.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:13   CCAUAUGGAUUGGAGGGGAUUGAU   36 Target Full Sequence	1.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
EZ101759.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:36   CCAUAUGGAUUGGAGGGGAUUGAU   59 Target Full Sequence	1.5	TSA: Zea mays contig37415, mRNA sequence	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:14   CCAUAUGGAUUGGAGGGGAUUGAU   37 Target Full Sequence	1.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:14   CCAUAUGGAUUGGAGGGGAUUGAU   37 Target Full Sequence	1.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:14   CCAUAUGGAUUGGAGGGGAUUGAU   37 Target Full Sequence	1.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:782   CCAUAUGGAUUGGAGGGGAUUGAU   805 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:398   CCAUAUGGAUUGGAGGGGAUUGAU   421 Target Full Sequence	1.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
BT041645.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1252   CCAUAUGGAUUGGAGGGGAUUGAU   1275 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0022N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT064813.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1137   CCAUAUGGAUUGGAGGGGAUUGAU   1160 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0171N23 mRNA, complete cds	NA	coding protein	psRNATarget
BT085188.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1293   CCAUAUGGAUUGGAGGGGAUUGAU   1316 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0324P02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001327795.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1169   CCAUAUGGAUUGGAGGGGAUUGAU   1192 Target Full Sequence	1.5	Zea mays peroxisomal 2,4-dienoyl-CoA reductase-like (LOC103504713), mRNA	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1006   CCAUAUGGAUUGGAGGGGAUUGAU   1029 Target Full Sequence	1.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU959771.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1248   CCAUAUGGAUUGGAGGGGAUUGAU   1271 Target Full Sequence	1.5	Zea mays clone 219936 mRNA sequence	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1541   CCAUAUGGAUUGGAGGGGAUUGAU   1564 Target Full Sequence	1.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||| targets:1541   CCAUAUGGAUUGGAGGGGAUUGAU   1564 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661229.2	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |=|||||||||||||||=|||||| targets:2674   CUAUAUGGAUUGGAGGGGAUUGAU   2697 Target Full Sequence	1.5	PREDICTED: Zea mays kanadaptin (LOC103638266), mRNA	NA	coding protein	psRNATarget
EU944315.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||* targets:108   CCAUAUGGAUUGGAGGGGAUUGAG   131 Target Full Sequence	2.5	Zea mays clone 210152 mRNA sequence	NA	coding protein	psRNATarget
NM_001350187.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||||||||||||=|||||* targets:1561   CCAUAUGGAUUGGAGGGGAUUGAG   1584 Target Full Sequence	2.5	Zea mays mTERF family protein (LOC100283286), mRNA	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||*|||||||||=|||||| targets:322   CCAUAUGUAUUGGAGGGGAUUGAU   345 Target Full Sequence	2.5	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||*|||||||||=|||||| targets:862   CCAUAUGUAUUGGAGGGGAUUGAU   885 Target Full Sequence	2.5	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||*|||||||||=|||||| targets:859   CCAUAUGUAUUGGAGGGGAUUGAU   882 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||*|||||||||=|||||| targets:889   CCAUAUGUAUUGGAGGGGAUUGAU   912 Target Full Sequence	2.5	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||*|||||||||=|||||| targets:889   CCAUAUGUAUUGGAGGGGAUUGAU   912 Target Full Sequence	2.5	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   |||||||*|||||||||=|||||| targets:1161   CCAUAUGUAUUGGAGGGGAUUGAU   1184 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT066512.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   *|||=||||||||||||=|||||* targets:1919   GCAUGUGGAUUGGAGGGGAUUGAA   1942 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0013P08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001350033.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   *|||=||||||||||||=|||||* targets:2828   GCAUGUGGAUUGGAGGGGAUUGAA   2851 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 2, mRNA	NA	coding protein	psRNATarget
NM_001350032.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   *|||=||||||||||||=|||||* targets:2853   GCAUGUGGAUUGGAGGGGAUUGAA   2876 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383187 (LOC100383187), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU965673.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   =|||||||||||||||||*||||* targets:930   UCAUAUGGAUUGGAGGGAUUUGAG   953 Target Full Sequence	2.5	Zea mays clone 287893 partner of Nob1 mRNA, complete cds	NA	coding protein	psRNATarget
EU975791.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   =|||||||||||||||||*||||* targets:1226   UCAUAUGGAUUGGAGGGAUUUGAG   1249 Target Full Sequence	2.5	Zea mays clone 500984 partner of Nob1 mRNA, complete cds	NA	coding protein	psRNATarget
EZ090705.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   *=||=||||||||||||=|||||* targets:129   GUAUGUGGAUUGGAGGGGAUUGAA   152 Target Full Sequence	2.5	TSA: Zea mays contig26352, mRNA sequence	NA	coding protein	psRNATarget
EU972380.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   *|=*=|||||*||||||||||||| targets:331   GCGGGUGGAUCGGAGGGAAUUGAU   354 Target Full Sequence	1.0	Zea mays clone 380434 protein app1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158360.1	ncRNA:24   GGUAUACCUAACCUCCCUUAACUA   1   *|=*=|||||*||||||||||||| targets:331   GCGGGUGGAUCGGAGGGAAUUGAU   354 Target Full Sequence	1.0	Zea mays protein app1 (LOC100285467), mRNA	NA	coding protein	psRNATarget