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BaseInfo

ncRNA ID	novel_zma_miR24
Species	Zea mays
Class	miRNA
Genome position	Chr2:168132840-168132899 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2287160;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR3341856;SRR3341905;SRR5451004;SRR5451005;SRR5451006;SRR2089699;SRR2089701;SRR2089703;SRR2089704;SRR2089705
Length	22
Mature sequence(if miRNA)	39 - UUGGAGGGGAUUGAGGGGGCUA - 60
Stem-loop(if miRNA)	--   G     A         -       A   UUG AGGGG UUGAGGGGG CUAGAGU A   ||| ||||| ||||||||| ||||||| G   AAC UCCCC AACUCCCCC GAUCUUA G CU   A     C         C       G
Stem-loop sequence	UUGGAGGGGAUUGAGGGGGCUAGAGUAAGGGAUUCUAGCCCCCCUCAACCCCCUACAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546477.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   |||||||||||||||||||||= targets:8   UAGCCCCCUCAAUCCCCUCCAG   29 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
JB166488.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||||||||||||||||=||* targets:86   UAGCCCCCUCAAUCCCCUUCAU   107 Target Full Sequence	2.5	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
HI406027.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||||||||||||||||=||* targets:86   UAGCCCCCUCAAUCCCCUUCAU   107 Target Full Sequence	2.5	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||||||||||||||||=||* targets:86   UAGCCCCCUCAAUCCCCUUCAU   107 Target Full Sequence	2.5	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||||||||||||||||=||* targets:2622   UAGCCCCCUCAAUCCCCUUCAU   2643 Target Full Sequence	2.5	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||||||||||||||||=||* targets:2622   UAGCCCCCUCAAUCCCCUUCAU   2643 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||||||||||||||||=||* targets:2710   UAGCCCCCUCAAUCCCCUUCAU   2731 Target Full Sequence	2.5	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||=||||||||||||||||* targets:1672   UAGCUCCCUCAAUCCCCUCCAU   1693 Target Full Sequence	2.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   ||||*|==|||||||||||||| targets:1325   UAGCACUUUCAAUCCCCUCCAA   1346 Target Full Sequence	3.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI403493.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*||||||||||||||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	0.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*||||||||||||||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	0.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*||||||||||||||||||| targets:30   CAUCCCCCUCAAUCCCCUCCAA   51 Target Full Sequence	0.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
AY108800.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||||=||||||||||||||* targets:780   CAGCCCUCUCAAUCCCCUCCAU   801 Target Full Sequence	2.0	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||||=||||||||||||||* targets:1467   CAGCCCUCUCAAUCCCCUCCAU   1488 Target Full Sequence	2.0	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU952092.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:466   GAGCACCCUCAAUCCCCUCUAA   487 Target Full Sequence	2.5	Zea mays clone 1163776 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*|||||||||||||||||=| targets:3173   GAUCCCCCUCAAUCCCCUCCGA   3194 Target Full Sequence	1.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545634.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:7604   GAGCACCCUCAAUCCCCUCUAA   7625 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020545628.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:7754   GAGCACCCUCAAUCCCCUCUAA   7775 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545630.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:7909   GAGCACCCUCAAUCCCCUCUAA   7930 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020545629.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:7909   GAGCACCCUCAAUCCCCUCUAA   7930 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020545631.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:7874   GAGCACCCUCAAUCCCCUCUAA   7895 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020545626.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:7909   GAGCACCCUCAAUCCCCUCUAA   7930 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545633.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|||*||||||||||||||=|| targets:7901   GAGCACCCUCAAUCCCCUCUAA   7922 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274681 (LOC100274681), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   |**|||||||||||||||||=| targets:2148   UUUCCCCCUCAAUCCCCUCCGA   2169 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403355.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*=|=|||||||||||||||| targets:28   CAUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	2.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*=|=|||||||||||||||| targets:28   CAUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	2.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
JB163816.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*=|=|||||||||||||||| targets:28   CAUUCUCCUCAAUCCCCUCCAA   49 Target Full Sequence	2.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*|=|||||||||||||=||| targets:82   AAUCUCCCUCAAUCCCCUUCAA   103 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*|=|||||||||||||=||| targets:82   AAUCUCCCUCAAUCCCCUUCAA   103 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
JB163452.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*|=|||||||||||||=||| targets:82   AAUCUCCCUCAAUCCCCUUCAA   103 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
BT088155.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   |**|=|=||||||||||||||| targets:1461   UUUCUCUCUCAAUCCCCUCCAA   1482 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   |**||||=||||||||||=||| targets:230   UUUCCCCUUCAAUCCCCUUCAA   251 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
XM_008654930.2	ncRNA:22   AUCGGGGGAG-UUAGGGGAGGUU   1   *|*|||||||-|||||||||||| targets:78   CAUCCCCCUCGAAUCCCCUCCAA   100 Target Full Sequence	3.0	PREDICTED: Zea mays abnormal spindle-like microcephaly-associated protein homolog (LOC103633234), mRNA	NA	coding protein	psRNATarget
BT064254.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*==|=||||||||||||||| targets:1642   AAUUUCUCUCAAUCCCCUCCAA   1663 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349063.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*==|=||||||||||||||| targets:1642   AAUUUCUCUCAAUCCCCUCCAA   1663 Target Full Sequence	3.0	Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA	NA	coding protein	psRNATarget
BT067571.1	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*==|=||||||||||||||| targets:1629   AAUUUCUCUCAAUCCCCUCCAA   1650 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008649902.2	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   *|*==|=||||||||||||||| targets:1672   AAUUUCUCUCAAUCCCCUCCAA   1693 Target Full Sequence	3.0	PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:22   AUCGGGGGAGUUAGGGGAGGUU   1   |**||*|||||||||=|||||| targets:2427   UUUCCACCUCAAUCCUCUCCAA   2448 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget