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BaseInfo

ncRNA ID	novel_zma_miR22
Species	Zea mays
Class	miRNA
Genome position	Chr2:174363182-174363265 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR2089709;SRR2089711;SRR2089712;SRR2089713;SRR3385660;SRR5451003;SRR5451005;SRR5451006;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089704
Length	21
Mature sequence(if miRNA)	64 - CCGGAGGGGUUGAAGGUGCUA - 84
Stem-loop(if miRNA)	--       -     A   U                -     A   CCGGAGG GGUUG AGG GCUAAAAUCCUCUUUU AUUCA U   ||||||| ||||| ||| |||||||||||||||| |||||   GGCCUCC CUAAC UCC CGAUUUUAGGGGAAAA UAAGU U AU       U     C   U                A     U
Stem-loop sequence	CCGGAGGGGUUGAAGGUGCUAAAAUCCUCUUUUAUUCAAUUUUGAAUAAAAAGGGGAUUUUAGCUCCUCCAAUCUCCUCCGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT062360.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ||||*||||=||||||||||| targets:1455   UAGCCCCUUUAACCCCUCCGG   1475 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0286E11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549837.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ||||*||||=||||||||||| targets:3499   UAGCCCCUUUAACCCCUCCGG   3519 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001321373.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ||||*||||=||||||||||| targets:3743   UAGCCCCUUUAACCCCUCCGG   3763 Target Full Sequence	2.5	Zea mays ARM repeat superfamily protein (LOC100381825), mRNA	NA	coding protein	psRNATarget
XM_008674878.2	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ||||*||||=||||||||||| targets:3705   UAGCCCCUUUAACCCCUCCGG   3725 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008674877.2	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ||||*||||=||||||||||| targets:3730   UAGCCCCUUUAACCCCUCCGG   3750 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674876.2	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ||||*||||=||||||||||| targets:3793   UAGCCCCUUUAACCCCUCCGG   3813 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549836.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ||||*||||=||||||||||| targets:4541   UAGCCCCUUUAACCCCUCCGG   4561 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT066080.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   |=*|||||||||||=|||||| targets:226   UGUCACCUUCAACCUCUCCGG   246 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0280C05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175739.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   |=*|||||||||||=|||||| targets:226   UGUCACCUUCAACCUCUCCGG   246 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 72B1 (LOC100383065), mRNA	NA	coding protein	psRNATarget
XM_020551676.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   |=*|||||||||||=|||||| targets:450   UGUCACCUUCAACCUCUCCGG   470 Target Full Sequence	2.5	PREDICTED: Zea mays UDP-glycosyltransferase 72B1 (LOC100383065), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001301591.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   **|||||||||||=||||||* targets:642   GCGCACCUUCAACUCCUCCGC   662 Target Full Sequence	2.5	Zea mays endoglucanase 12-like (LOC103641803), mRNA	NA	coding protein	psRNATarget
KC196753.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   **|||||||||||=||||||* targets:642   GCGCACCUUCAACUCCUCCGC   662 Target Full Sequence	2.5	Zea mays cellulase (Cel6) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153770.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ***|||||||||||*|||||| targets:404   CUUCACCUUCAACCGCUCCGG   424 Target Full Sequence	2.5	Zea mays early nodulin-like protein 3 (LOC100280850), mRNA	NA	coding protein	psRNATarget
EU954206.1	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   ***|||||||||||*|||||| targets:404   CUUCACCUUCAACCGCUCCGG   424 Target Full Sequence	2.5	Zea mays clone 1458489 early nodulin-like protein 3 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008672026.2	ncRNA:21   AUCGUGGAAGUUGGGGAGGCC   1   **|||||||||*||||||||* targets:903   CUGCACCUUCACCCCCUCCGA   923 Target Full Sequence	2.5	PREDICTED: Zea mays serine carboxypeptidase II-3 (LOC103647494), mRNA	NA	coding protein	psRNATarget