Search result

BaseInfo

ncRNA ID	novel_zma_miR20
Species	Zea mays
Class	miRNA
Genome position	Chr2:177759034-177759090 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR1997865
Length	25
Mature sequence(if miRNA)	33 - GCGGGGACGAGGACGAGACAGGCUC - 57
Stem-loop(if miRNA)	--     -  C A   -    ACA    - UC   GCGGG GA G GGA CGAG   GGCU C  G   ||||| || | ||| ||||   |||| |   UGCCC CU C CCU GCUC   CCGA G  C UG     U  - -   C    --G    A UU
Stem-loop sequence	GCGGGGACGAGGACGAGACAGGCUCUCGCUUGAAGCCGCUCGCUCCCUCUCCCGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT036940.1	ncRNA:25   CUCG--GACAGAGCAGGAGCAGGGGCG   1   ||||--||||||||||||||||||||| targets:1093   GAGCGACUGUCUCGUCCUCGUCCCCGC   1119 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0148D20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538751.1	ncRNA:25   CUCGGACAGAGCAGGAGCAGGGGCG   1   *|||-||*|||||||||||||=||| targets:395   CAGC-UGGCUCGUCCUCGUCCUCGC   418 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g38730 (LOC103627907), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001310518.1	ncRNA:25   CUCGG--ACA-GAGCAGGAGCAGGGGCG   1   **|=|--|||-||||||||||||||||= targets:241   UCGUCGUUGUGCUCGUCCUCGUCCCCGU   268 Target Full Sequence	3.0	Zea mays putative MYB DNA-binding domain superfamily protein (LOC100194332), mRNA	NA	coding protein	psRNATarget
BT036851.1	ncRNA:25   CUCGG--ACA-GAGCAGGAGCAGGGGCG   1   **|=|--|||-||||||||||||||||= targets:241   UCGUCGUUGUGCUCGUCCUCGUCCCCGU   268 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0143J15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541916.1	ncRNA:25   CUCGG--ACA-GAGCAGGAGCAGGGGCG   1   **|=|--|||-||||||||||||||||= targets:449   UCGUCGUUGUGCUCGUCCUCGUCCCCGU   476 Target Full Sequence	3.0	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (LOC100194332), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008656223.2	ncRNA:25   CUCGG--ACA-GAGCAGGAGCAGGGGCG   1   **|=|--|||-||||||||||||||||= targets:458   UCGUCGUUGUGCUCGUCCUCGUCCCCGU   485 Target Full Sequence	3.0	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (LOC100194332), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656222.2	ncRNA:25   CUCGG--ACA-GAGCAGGAGCAGGGGCG   1   **|=|--|||-||||||||||||||||= targets:516   UCGUCGUUGUGCUCGUCCUCGUCCCCGU   543 Target Full Sequence	3.0	PREDICTED: Zea mays putative MYB DNA-binding domain superfamily protein (LOC100194332), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672012.2	ncRNA:25   CUCGG-A-CAGAGCAGGAGCAGGGGCG   1   |*|||-|-|||||*||||||||||||| targets:672   GCGCCGUCGUCUCCUCCUCGUCCCCGC   698 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103647482), mRNA	NA	coding protein	psRNATarget
BT036003.1	ncRNA:25   CUCGGACAGAGCAGGAGCAGGGGCG   1   |=|*|*|||||||||||||||*||= targets:130   GGGACCGUCUCGUCCUCGUCCACGU   154 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0091J21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138766.1	ncRNA:25   CUCGGACAGAGCAGGAGCAGGGGCG   1   |=|*|*|||||||||||||||*||= targets:130   GGGACCGUCUCGUCCUCGUCCACGU   154 Target Full Sequence	2.5	Zea mays Adenine nucleotide alpha hydrolase-like superfamily protein (LOC100193673), mRNA	NA	coding protein	psRNATarget
EU952101.1	ncRNA:25   CUCGGACAG-AGCAGGAGCAGGGGCG   1   |*|||-|||-|||||||||||||||* targets:3035   GCGCC-GUCGUCGUCCUCGUCCCCGA   3059 Target Full Sequence	3.0	Zea mays clone 1164740 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget