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BaseInfo

ncRNA ID	novel_zma_miR18
Species	Zea mays
Class	miRNA
Genome position	Chr2:210630731-210630828 [-]
Reference genome	RefGen_v4
Source	SRR2089708
Length	24
Mature sequence(if miRNA)	75 - GGGCGCGGGACGAACACGAAGGCA - 98
Stem-loop(if miRNA)	--         -A   A A      ----------CAGC   AUUCCCACCUCU   GGGCGCGGG  CGA C CGAAGG              GGG            C   |||||||||  ||| | ||||||              |||            U   CUCGCGCUC  GCU G GCUUCC              CGG            C AG         CG   C C      CCCUUUCACUCCGC   CCUCUGGCCGCA
Stem-loop sequence	GGGCGCGGGACGAACACGAAGGCAGCGGGAUUCCCACCUCUCUCACGCCGGUCUCCGGCCGCCUCACUUUCCCCCUUCGCGCUCGGCCUCGCGCUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409935.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||||||||||||||||||| targets:77   GGCCUUCGUGUUCGUCCCGCGCCC   100 Target Full Sequence	0.0	Sequence 8060 from Patent EP2074227	NA	coding protein	psRNATarget
JB170396.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||||||||||||||||||| targets:77   GGCCUUCGUGUUCGUCCCGCGCCC   100 Target Full Sequence	0.0	Sequence 8060 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242065.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||||||||||||||||||| targets:77   GGCCUUCGUGUUCGUCCCGCGCCC   100 Target Full Sequence	0.0	Sequence 8060 from Patent EP2985353	NA	coding protein	psRNATarget
BT036940.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||||||||||||||||||| targets:1000   GGCCUUCGUGUUCGUCCCGCGCCC   1023 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0148D20 mRNA, complete cds	NA	coding protein	psRNATarget
BT054635.2	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||||||||||||||||||| targets:17   GGCCUUCGUGUUCGUCCCGCGCCC   40 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0017I20 mRNA, complete cds	NA	coding protein	psRNATarget
EU940966.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||||||||||||||||||| targets:710   GGCCUUCGUGUUCGUCCCGCGCCC   733 Target Full Sequence	0.0	Zea mays clone 1223688 mRNA sequence	NA	coding protein	psRNATarget
EU952144.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||||||||||||||||||| targets:1416   GGCCUUCGUGUUCGUCCCGCGCCC   1439 Target Full Sequence	0.0	Zea mays clone 1212406 mRNA sequence	NA	coding protein	psRNATarget
LQ241666.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *|||||||||||=||||||||||| targets:9   GGCCUUCGUGUUUGUCCCGCGCCC   32 Target Full Sequence	1.5	Sequence 7661 from Patent EP2985353	NA	coding protein	psRNATarget
JB169997.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *|||||||||||=||||||||||| targets:9   GGCCUUCGUGUUUGUCCCGCGCCC   32 Target Full Sequence	1.5	Sequence 7661 from Patent EP2559767	NA	coding protein	psRNATarget
HI409536.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *|||||||||||=||||||||||| targets:9   GGCCUUCGUGUUUGUCCCGCGCCC   32 Target Full Sequence	1.5	Sequence 7661 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001138227.2	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *|||||||||||=||||||||||| targets:1149   GGCCUUCGUGUUUGUCCCGCGCCC   1172 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193060 (LOC100193060), mRNA	NA	coding protein	psRNATarget
NM_001138227.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *|||||||||||=||||||||||| targets:1154   GGCCUUCGUGUUUGUCCCGCGCCC   1177 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193060 (LOC100193060), mRNA	NA	coding protein	psRNATarget
BT035216.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *|||||||||||=||||||||||| targets:1154   GGCCUUCGUGUUUGUCCCGCGCCC   1177 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0046F04 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241946.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   **|||||||||||||||||||||| targets:78   GACCUUCGUGUUCGUCCCGCGCCC   101 Target Full Sequence	0.0	Sequence 7941 from Patent EP2985353	NA	coding protein	psRNATarget
JB170277.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   **|||||||||||||||||||||| targets:78   GACCUUCGUGUUCGUCCCGCGCCC   101 Target Full Sequence	0.0	Sequence 7941 from Patent EP2559767	NA	coding protein	psRNATarget
HI409816.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   **|||||||||||||||||||||| targets:78   GACCUUCGUGUUCGUCCCGCGCCC   101 Target Full Sequence	0.0	Sequence 7941 from Patent EP2074227	NA	coding protein	psRNATarget
EZ072125.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   *||||||*|||||||||||||||| targets:74   GGCCUUCAUGUUCGUCCCGCGCCC   97 Target Full Sequence	1.0	TSA: Zea mays contig07762, mRNA sequence	NA	coding protein	psRNATarget
EU975155.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   ||||*||||**||||||||||||| targets:250   UGCCGUCGUCGUCGUCCCGCGCCC   273 Target Full Sequence	2.0	Zea mays clone 475282 calcium-binding allergen Ole e 8 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158897.1	ncRNA:24   ACGGAAGCACAAGCAGGGCGCGGG   1   ||||*||||**||||||||||||| targets:250   UGCCGUCGUCGUCGUCCCGCGCCC   273 Target Full Sequence	2.0	Zea mays calcium-binding allergen Ole e 8 (LOC100286009), mRNA	NA	coding protein	psRNATarget