| ncRNA ID | novel_zma_miR17 |
| Species | Zea mays |
| Class | miRNA |
| Genome position | Chr10:87402316-87402533 [-] |
| Reference genome | RefGen_v4 |
| Source | SRR2089708;SRR2089709;SRR2089710;SRR2089711;SRR1997866;SRR2089698;SRR2089699;SRR2089702;SRR2089706;SRR2089707 |
| Length | 24 |
| Mature sequence(if miRNA) | 195 - AGAAGACUGGUGCACAUGGUGCAC - 218 |
| Stem-loop(if miRNA) |
-- G C A C -AUUAUU A CA UA C ACUAUA AGAA A UGGUGCACAUGGUGCACAUAUUAAAUCAUUA CACUCAUUUUAGAUCUAA GUCUCUAGUUG CA UUUA AA ACACCUUCCA C C |||| | ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| || |||| || |||||||||| | A UCUU U ACCACGUGUACCACGUGUAUAAUUUAGUAGU GUGAGUAAAAUUUAGAUU CAGAGAUCAAC GU AAAU UU UGUGGGAGGU G A UA G A G A AAACCAU A AA CC U CACCAC |
| Stem-loop sequence | AGAAGACUGGUGCACAUGGUGCACAUAUUAAAUCAUUAACACUCAUUUUAGAUCUAACGUCUCUAGUUGAUUAUUCAAUUUACAAAUAACACCUUCCACCACUAUACAACACCACGUUGGAGGGUGUCCUUAAUAAAAUGUACCAAACAACUAGAGACAUUAGAUUUAAAAUGAGUGGUGAUGAUUUAAUAUGUGCACCAUGUGCACCAAUGUUCUAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_020552764.1 |
|
1.5 | PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_008681116.2 |
|
1.5 | PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA | NA | coding protein | psRNATarget | |||||||||
| XM_008646350.2 |
|
2.5 | PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA | NA | coding protein | psRNATarget |