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BaseInfo

ncRNA ID novel_zma_miR16
Species Zea mays
Class miRNA
Genome position Chr2:213096484-213096543 [-]
Reference genome RefGen_v4
Source SRR2089708;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR2089707
Length 23
Mature sequence(if miRNA) 1 - AAAUCAUGGAUUUGUAGUGGCGG - 23
Stem-loop(if miRNA) --             AUG        AAAC
  GCCACUACAAAUC   GAUUUGUA    C
  |||||||||||||   ||||||||
  CGGUGAUGUUUAG   CUAAACAU    G
GG             GUA        CACC
Stem-loop sequence GCCACUACAAAUCAUGGAUUUGUAAAACCGCCACUACAAAUCAUGGAUUUGUAGUGGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU943186.1
ncRNA:23   GGCGGUGAUGUUUAGGUACUAAA   1
  |||=|||*|*|||||||||||||
targets:1950   CCGUCACAAGAAAUCCAUGAUUU   1972

2.0 Zea mays clone 1582065 mRNA sequence NA coding protein psRNATarget
HI402986.1
ncRNA:23   GGCGGUGAUGUUUAGGUACUAAA   1
  |||=|**||*|||||||||||||
targets:63   CCGUCUGUAGAAAUCCAUGAUUU   85

3.0 Sequence 1111 from Patent EP2074227 NA coding protein psRNATarget
JB163447.1
ncRNA:23   GGCGGUGAUGUUUAGGUACUAAA   1
  |||=|**||*|||||||||||||
targets:63   CCGUCUGUAGAAAUCCAUGAUUU   85

3.0 Sequence 1111 from Patent EP2559767 NA coding protein psRNATarget
LQ235116.1
ncRNA:23   GGCGGUGAUGUUUAGGUACUAAA   1
  |||=|**||*|||||||||||||
targets:63   CCGUCUGUAGAAAUCCAUGAUUU   85

3.0 Sequence 1111 from Patent EP2985353 NA coding protein psRNATarget