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BaseInfo

ncRNA ID	novel_zma_miR11
Species	Zea mays
Class	miRNA
Genome position	Chr2:216367739-216367845 [-]
Reference genome	RefGen_v4
Source	SRR2089708;SRR2089709;SRR2089712;SRR2089714;SRR2089715;SRR5451004;SRR2089698
Length	24
Mature sequence(if miRNA)	1 - AAGGAGGAGCUGGCCAGAGCAUGU - 24
Stem-loop(if miRNA)	--                                              AAACA   AUGCUCUGGCCAGCUCCUCCUUGGAGUUUUGCUCUGAAGCCAUACC     G   ||||||||||||||||||||||||||||||||||||||||||||||     A   UACGAGACCGGUCGAGGAGGAACCUCAAAACGAGACUUCGGUAUGG     C UG                                              AAAUC
Stem-loop sequence	AUGCUCUGGCCAGCUCCUCCUUGGAGUUUUGCUCUGAAGCCAUACCAAACAGACCUAAAGGUAUGGCUUCAGAGCAAAACUCCAAGGAGGAGCUGGCCAGAGCAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403103.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||||||||||||||| targets:19   GCAUGCUCUGGCCAGCUCCUCCUU   42 Target Full Sequence	0.0	Sequence 1228 from Patent EP2074227	NA	coding protein	psRNATarget
JB163564.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||||||||||||||| targets:19   GCAUGCUCUGGCCAGCUCCUCCUU   42 Target Full Sequence	0.0	Sequence 1228 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235233.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||||||||||||||| targets:19   GCAUGCUCUGGCCAGCUCCUCCUU   42 Target Full Sequence	0.0	Sequence 1228 from Patent EP2985353	NA	coding protein	psRNATarget
JB163586.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||||||||||||||| targets:19   GCAUGCUCUGGCCAGCUCCUCCUU   42 Target Full Sequence	0.0	Sequence 1250 from Patent EP2559767	NA	coding protein	psRNATarget
HI403125.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||||||||||||||| targets:19   GCAUGCUCUGGCCAGCUCCUCCUU   42 Target Full Sequence	0.0	Sequence 1250 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235255.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||||||||||||||| targets:19   GCAUGCUCUGGCCAGCUCCUCCUU   42 Target Full Sequence	0.0	Sequence 1250 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008676452.2	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||||||||||||||| targets:2819   GCAUGCUCUGGCCAGCUCCUCCUU   2842 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103650859 (LOC103650859), mRNA	NA	coding protein	psRNATarget
JB163574.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||=|||||||||||| targets:19   GCAUGCUCUGGUCAGCUCCUCCUU   42 Target Full Sequence	1.5	Sequence 1238 from Patent EP2559767	NA	coding protein	psRNATarget
HI403113.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||=|||||||||||| targets:19   GCAUGCUCUGGUCAGCUCCUCCUU   42 Target Full Sequence	1.5	Sequence 1238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235243.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   =||||||||||=|||||||||||| targets:19   GCAUGCUCUGGUCAGCUCCUCCUU   42 Target Full Sequence	1.5	Sequence 1238 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001157185.1	ncRNA:24   UGUACGAGAC-CGGUCGAGGAGGAA   1   *|=|||||||-|||||||||||||* targets:525   CCGUGCUCUGCGCCAGCUCCUCCUG   549 Target Full Sequence	3.0	Zea mays F-box domain containing protein (LOC100284290), mRNA	NA	coding protein	psRNATarget
EU967797.1	ncRNA:24   UGUACGAGAC-CGGUCGAGGAGGAA   1   *|=|||||||-|||||||||||||* targets:525   CCGUGCUCUGCGCCAGCUCCUCCUG   549 Target Full Sequence	3.0	Zea mays clone 306171 F-box domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552642.1	ncRNA:24   UGUACGAGACCGGUCGAGGAGGAA   1   *|**|||||*|||=|||||||||| targets:1652   CCUCGCUCUCGCCGGCUCCUCCUU   1675 Target Full Sequence	2.5	PREDICTED: Zea mays ethylene-responsive transcription factor ERF053-like (LOC109939235), mRNA	NA	coding protein	psRNATarget